Listar por autor UPNA "Ramírez Nasto, Lucía"
Mostrando ítems 1-20 de 39
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101 Dothideomycetes genomes: a test case for predicting lifestyles and emergence of pathogens
Haridas, Sajeet; Castanera Andrés, Raúl
; Culley, D. E.; Daum, C.; Ramírez Nasto, Lucía ; Alfaro Sánchez, Manuel (Westerdijk Fungal Biodiversity Institute, 2020)
Artículo / Artikulua 
Dothideomycetes is the largest class of kingdom Fungi and comprises an incredible diversity of lifestyles, many of which have evolved multiple times. Plant pathogens represent a major ecological niche of the class ... -
Basidiomycetes telomeres: a bioinformatics approach
Ramírez Nasto, Lucía ; Pérez Garrido, María Gumersinda ; Castanera Andrés, Raúl ; Santoyo Santos, Francisco ; Pisabarro de Lucas, Gerardo (InTechOpen, 2011)
Capítulo de libro / Liburuen kapitulua
The bioinformatics analysis described in this paper allowed us to establish the type and the number of the telomere repeat unit in the basidiomycetes analyzed, to suggest the putative linkage groups in fungi where linkage ... -
Characterization of transposon activity and genome-wide epigenetic regulation throughout the life cycle of Pleurotus ostreatus
Borgognone, Alessandra (2017)
Tesis doctoral / Doktoretza tesia
Most prokaryotic and eukaryotic life forms have to deal with the presence of repetitive DNA sequences called transposable elements (TEs), whose ability to mobilize through the genome and insert at random position has an ... -
Comparative and transcriptional analysis of the predicted secretome in the lignocellulose-degrading basidiomycete fungus Pleurotus ostreatus
Alfaro Sánchez, Manuel ; Castanera Andrés, Raúl ; Lavín Trueba, José Luis ; Oguiza Tomé, José Antonio ; Ramírez Nasto, Lucía ; Pisabarro de Lucas, Gerardo (WileySociety for Applied Microbiology, 2016)
Artículo / Artikulua
Fungi interact with their environment by secreting proteins to obtain nutrients, elicit responses and modify their surroundings. Because the set of proteins secreted by a fungus is related to its lifestyle, it should be ... -
Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis
Fernández Fueyo, Elena; Ruiz Dueñas, Francisco J.; Ferreira, Patricia; Floudas, Dimitrios; Lavín Trueba, José Luis; Oguiza Tomé, José Antonio ; Pérez Garrido, María Gumersinda ; Pisabarro de Lucas, Gerardo ; Ramírez Nasto, Lucía ; Santoyo Santos, Francisco (National Academy of Sciences, 2012)
Artículo / Artikulua
Efficient lignin depolymerization is unique to the wood decay basidiomycetes, collectively referred to as white rot fungi. Phanerochaete chrysosporium simultaneously degrades lignin and cellulose, whereas the closely related ... -
Comparative genomics of Coniophora olivacea reveals different patterns of genome expansion in Boletales
Castanera Andrés, Raúl ; Pérez Garrido, María Gumersinda ; López Varas, Leticia ; Amselem, Joëlle; LaButti, Kurt; Singan, Vasanth; Lipzen, Anna; Haridas, Sajeet; Barry, Kerrie; Grigoriev, Igor V.; Pisabarro de Lucas, Gerardo ; Ramírez Nasto, Lucía (BioMed Central, 2017)
Artículo / Artikulua
Background: Coniophora olivacea is a basidiomycete fungus belonging to the order Boletales that produces brown-rot decay on dead wood of conifers. The Boletales order comprises a diverse group of species including saprotrophs ... -
Computational prediction of protein-coding gene and annotation of DNA sequences with agronomic interest in Pleurotus ostreatus (Oyster Mushroom)
Palma Dovis, Leopoldo ; Peñas Parrila, María Manuela; Ramírez Nasto, Lucía ; Pisabarro de Lucas, Gerardo (Universidad Pública de Navarra / Nafarroako Unibertsitate Publikoa, 2006)
Contribución a congreso / Biltzarrerako ekarpena
Pleurotus ostreatus, commonly known as oyster mushroom, is a commercially important edible fungus with interesting biotechnological properties. Quantitative trait loci (QTL) analyses are rare in fungi and little is known ... -
Effect of nutritional factors and copper on the regulation of laccase enzyme production in Pleurotus ostreatus
Durán Sequeda, Dinary Eloísa; Suspes, Daniela; Maestre, Estibenson; Alfaro Sánchez, Manuel ; Pérez Garrido, María Gumersinda ; Ramírez Nasto, Lucía ; Pisabarro de Lucas, Gerardo ; Sierra Ramírez, Rocío (MDPI, 2022)
Artículo / Artikulua
This research aimed to establish the relationship between carbon–nitrogen nutritional factors and copper sulfate on laccase activity (LA) by Pleurotus ostreatus. Culture media composition was tested to choose the nitrogen ... -
Enzymatic characterization of a monokaryon population of the edible mushroom, Pleurotus ostreatus with a view to genetic improvement
Terrón, María del Carmen; López, María; Carbajo, José M.; Pisabarro de Lucas, Gerardo ; Ramírez Nasto, Lucía ; González Aldo, E. (Universidad Pública de Navarra / Nafarroako Unibertsitate Publikoa, 2006)
Contribución a congreso / Biltzarrerako ekarpena
In this work the lignocellulolytic enzymes produced by the edible mushroom Pleurotus ostreatus var. florida were studied. The objective was to know their relationship with the degradation of the biopolymers present in ... -
Expansion of the global RNA virome reveals diverse clades of bacteriophages
Neri, Uri; Wolf, Yuri I.; Roux, Simon; Camargo, Antonio Pedro; Lee, Benjamin; Kazlauskas, Darius; Chen, I. Min; Ivanova, Natalia; Zeigler Allen, Lisa; Paez-Espino, David; Bryant, Donald A.; Bhaya, Devaki; Krupovic, Mart; Dolja, Valerian V.; Kyrpides, Nikos C.; Koonin, Eugene V.; Gophna, Uri; RNA Virus Discovery Consortium; Narrowe, Adrienne B.; Ramírez Nasto, Lucía ; Wang, Zhong; Nusslein, Klaus; Meredith, Laura K.; Buée, Marc; Huntemann, Marcel; Kalyuzhnaya, Marina G.; Waldrop, Mark P.; Sullivan, Matthew B.; Schrenk, Matthew O.; Hess, Matthias; Vega, Michael A.; O’Malley, Michelle A.; Medina, Mónica; Gilbert, Naomi E.; Delherbe, Nathalie; Mason, Olivia U.; Probst, Alexander J.; Sczyrba, Alexander; Kohler, Annegret; Séguin, Armand; Shade, Ashley; Campbell, Barbara J.; Lindahl, Björn D.; Reese, Brandi Kiel; Roque, Breanna M.; DeRito, Christopher; Averill, Colin; Cullen, Daniel; Beck, David A.C.; Walsh, David A.; Ward, David M.; Wu, Dongying; Eloe-Fadrosh, Emiley; Brodie, Eoin L.; Dijkstra, Paul; Chuckran, Peter F.; Baldrian, Petr; Constant, Philippe; Stepanauskas, Ramunas; Daly, Rebecca A.; Lamendella, Regina; Gruninger, Robert J.; McKay, Robert M.; Hylander, Samuel; Lebeis, Sarah L.; Esser, Sarah P.; Acinas, Silvia G.; Young, Erica B.; Lilleskov, Erik A.; Castillo, Federico J.; Martin, Francis; LeCleir, Gary R.; Attwood, Graeme T.; Cadillo-Quiroz, Hinsby; Simon, Holly M.; Hewson, Ian; Grigoriev, Igor V.; Tiedje, James M.; Jansson, Janet K.; Lee, Janey; VanderGheynst, Jean S.; Dangl, Jeff; Bowman, Jeff S.; Blanchard, Jeffrey L.; Bowen, Jennifer L.; Xu, Jiangbing; Banfield, Jillian F.; Deming, Jody W.; Kostka, Joel E.; Gladden, John M.; Rapp, Josephine Z.; Sharpe, Joshua; McMahon, Katherine D.; Treseder, Kathleen K.; Bidle, Kay D.; Wrighton, Kelly C.; Thamatrakoln, Kimberlee; Wilhelm, Steven S.; Singer, Steven W.; Tringe, Susannah S.; Woyke, Tanja; Reddy, T.B.K.; Bell, Terrence H.; Mock, Thomas; McAllister, Tim; Thiel, Vera; Denef, Vincent J.; Liu, Wen-Tso; Martens-Habbena, Willm; Liu, Xiao-Jun Allen; Cooper, Zachary S. (Elsevier, 2022)
Artículo / Artikulua
High-throughput RNA sequencing offers broad opportunities to explore the Earth RNA virome. Mining 5,150 diverse metatranscriptomes uncovered >2.5 million RNA virus contigs. Analysis of >330,000 RNA-dependent RNA polymerases ... -
Genetic breeding of edible mushrooms: from the genome to the production of new varieties of Pleurotus ostreatus
Pisabarro de Lucas, Gerardo ; Peñas Parrila, María Manuela; Pérez Garrido, María Gumersinda ; Park, Sang-Kyu ; Eizmendi Goicoechea, Arantza; Parada Albarracín, Julián Andrés ; Palma Dovis, Leopoldo ; Idareta Olagüe, Eneko ; Jurado Cabanillas, Javier ; Castellón Gadea, Jordi ; Ramírez Nasto, Lucía (Universidad Pública de Navarra / Nafarroako Unibertsitate Publikoa, 2006)
Contribución a congreso / Biltzarrerako ekarpena
The breeding of new varieties of industrially cultivated edible mushrooms must proceed in the framework defined by the breeding objectives, the biological characteristics of the material and the legal and cultural ... -
Genetic linkage map of the edible basidiomycete Pleurotus ostreatus
Larraya Reta, Luis María ; Pérez Garrido, María Gumersinda ; Ritter, Enrique; Pisabarro de Lucas, Gerardo ; Ramírez Nasto, Lucía (American Society for Microbiology, 2000)
Artículo / Artikulua
We have constructed a genetic linkage map of the edible basidiomycete Pleurotus ostreatus (var. Florida). The map is based on the segregation of 178 random amplified polymorphic DNA and 23 restriction fragment length polymorphism ... -
Genomic analysis enlightens agaricales lifestyle evolution and increasing peroxidase diversity
Ruiz Dueñas, Francisco J.; Barrasa, José M.; Sánchez-García, Marisol; Camarero, Susana; Miyauchi, Shingo; Linde, Dolores; Babiker, Rashid; Drula, Elodie; Ayuso-Fernández, Iván; Pacheco, Remedios; Padilla, Guillermo; Ferreira, Patricia; Barriuso, Jorge; Kellner, Harald; Castanera Andrés, Raúl ; Alfaro Sánchez, Manuel ; Ramírez Nasto, Lucía ; Pisabarro de Lucas, Gerardo ; Riley, Robert; Kuo, Alan; Andreopoulos, William; LaButti, Kurt; Pangilinan, Jasmyn; Tritt, Andrew; Lipzen, Anna; He, Guifen; Yan, Mi; Vivian, Ng; Grigoriev, Igor V.; Cullen, Daniel; Martin, Francis; Rosso, Marie-Noëlle; Henrissat, Bernard; Hibbett, David; Martínez, Ángel T.; Serrano, Ana (Oxford University Press, 2021)
Artículo / Artikulua
As actors of global carbon cycle, Agaricomycetes (Basidiomycota) have developed complex enzymatic machineries that allow them to decompose all plant polymers, including lignin. Among them, saprotrophic Agaricales are ... -
Genomics and transcriptomics characterization of genes expressed during postharvest at 4 degrees C by the edible basidiomycete Pleurotus ostreatus
Ramírez Nasto, Lucía ; Oguiza Tomé, José Antonio ; Pérez Garrido, María Gumersinda ; Lavín Trueba, José Luis ; Omarini, Alejandra; Santoyo Santos, Francisco ; Alfaro Sánchez, Manuel ; Castanera Andrés, Raúl ; Parenti, Alejandra ; Muguerza Domínguez, Elaia ; Pisabarro de Lucas, Gerardo (Viguera Editores, S. L., 2011)
Artículo / Artikulua
Pleurotus ostreatus is an industrially cultivated basidiomycete with nutritional and environmental applications. Its genome, which was sequenced by the joint Genome Institute, has become a model for lignin degradation ... -
Glucose counteracts wood-dependent induction of lignocellulolytic enzyme secretion in monokaryon and dikaryon submerged cultures of the white-rot basidiomycete Pleurotus ostreatus
Alfaro Sánchez, Manuel ; Majcherczyk, A.; Kües, Ursula; Ramírez Nasto, Lucía ; Pisabarro de Lucas, Gerardo (Nature Research, 2020)
Artículo / Artikulua
The secretome complexity and lignocellulose degrading capacity of Pleurotus ostreatus monokaryons mkPC9 and mkPC15 and mated dikaryon dkN001 were studied in submerged liquid cultures containing wood, glucose, and wood plus ... -
Highly expressed captured genes and cross-kingdom domains present in Helitrons create novel diversity in Pleurotus ostreatus and other fungi
Castanera Andrés, Raúl ; Pérez Garrido, María Gumersinda ; López Varas, Leticia ; Sancho, Rubén; Santoyo Santos, Francisco ; Alfaro Sánchez, Manuel ; Gabaldón Estevan, Juan Antonio; Pisabarro de Lucas, Gerardo ; Oguiza Tomé, José Antonio ; Ramírez Nasto, Lucía (BioMed Central, 2014)
Artículo / Artikulua
Background: Helitrons are class-II eukaryotic transposons that transpose via a rolling circle mechanism. Due to their ability to capture and mobilize gene fragments, they play an important role in the evolution of their ... -
Identification and functional characterisation of ctr1, a Pleurotus ostreatus gene coding for a copper transporter
Peñas Parrila, María Manuela; Azparren Larraya, María Goretti; Domínguez, A.; Sommer, H.; Ramírez Nasto, Lucía ; Pisabarro de Lucas, Gerardo (Universidad Pública de Navarra / Nafarroako Unibertsitate Publikoa, 2006)
Contribución a congreso / Biltzarrerako ekarpena
Copper homeostasis is primordial for life maintenance and especially relevant for ligning-degrading fungi whose phenol-oxidase enzymes depend on this micronutrient for their activity. In this paper we report the ... -
Isolation, molecular characterization and location of telomeric sequences of the basidiomycete Pleurotus ostreatus var. florida
Pérez Garrido, María Gumersinda ; Pisabarro de Lucas, Gerardo ; Ramírez Nasto, Lucía (Universidad Pública de Navarra / Nafarroako Unibertsitate Publikoa, 2006)
Contribución a congreso / Biltzarrerako ekarpena
The white rot fungus Pleurotus ostreatus is an edible basidiomycete of increasing biotechnological interest due to its ability to degrade both wood and chemicals related to lignin degradation products. Telomeres are ... -
Ligninolytic peroxidase gene expression by Pleurotus ostreatus: differential regulation in lignocellulose medium and effect of temperature and pH
Fernández Fueyo, Elena; Castanera Andrés, Raúl ; Ruiz Dueñas, Francisco J.; Ramírez Nasto, Lucía ; Pisabarro de Lucas, Gerardo (Elsevier, 2014)
Artículo / Artikulua
Pleurotus ostreatus is an important edible mushroom and a model lignin degrading organism, whose genome contains nine genes of ligninolytic peroxidases, characteristic of white-rot fungi. These genes encode six manganese ... -
Mapping of genomic regions (quantitative trait loci) controlling production and quality in industrial cultures of the edible basidiomycete Pleurotus ostreatus
Larraya Reta, Luis María ; Alfonso Esquíroz, Mikel ; Pisabarro de Lucas, Gerardo ; Ramírez Nasto, Lucía (American Society for Microbiology, 2003)
Artículo / Artikulua
Industrial production of the edible basidiomycete Pleurotus ostreatus (oyster mushroom) is based on a solid fermentation process in which a limited number of selected strains are used. Optimization of industrial mushroom ...
