Listar Artículos de revista - Aldizkari artikuluak por autor UPNA "Oguiza Tomé, José Antonio"
Mostrando ítems 1-10 de 10
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Comparative and transcriptional analysis of the predicted secretome in the lignocellulose-degrading basidiomycete fungus Pleurotus ostreatus
Alfaro Sánchez, Manuel
; Castanera Andrés, Raúl ; Lavín Trueba, José Luis ; Oguiza Tomé, José Antonio ; Ramírez Nasto, Lucía ; Pisabarro de Lucas, Gerardo (WileySociety for Applied Microbiology, 2016)
Artículo / Artikulua 
Fungi interact with their environment by secreting proteins to obtain nutrients, elicit responses and modify their surroundings. Because the set of proteins secreted by a fungus is related to its lifestyle, it should be ... -
Comparative genomic analysis of two-component regulatory proteins in pseudomonas syringae
Lavín Trueba, José Luis; Kiil, Kristoffer; Resano, Ohiana ; Ussery, David W.; Oguiza Tomé, José Antonio (BioMed Central, 2007)
Artículo / Artikulua
Background: Pseudomonas syringae is a widespread bacterial plant pathogen, and strains of P. syringae may be assigned to different pathovars based on host specificity among different plant species. The genomes of P. ... -
Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis
Fernández Fueyo, Elena; Ruiz Dueñas, Francisco J.; Ferreira, Patricia; Floudas, Dimitrios; Lavín Trueba, José Luis; Oguiza Tomé, José Antonio ; Pérez Garrido, María Gumersinda ; Pisabarro de Lucas, Gerardo ; Ramírez Nasto, Lucía ; Santoyo Santos, Francisco (National Academy of Sciences, 2012)
Artículo / Artikulua
Efficient lignin depolymerization is unique to the wood decay basidiomycetes, collectively referred to as white rot fungi. Phanerochaete chrysosporium simultaneously degrades lignin and cellulose, whereas the closely related ... -
Expansion of signal transduction pathways in fungi by extensive genome duplication
Corrochano, Luis M.; Kuo, Alan; Marcet Houben, Marina; Oguiza Tomé, José Antonio ; Pisabarro de Lucas, Gerardo (CellPress, 2016)
Artículo / Artikulua
Plants and fungi use light and other signals to regulate development, growth, and metabolism. The fruiting bodies of the fungus Phycomyces blakesleeanus are single cells that react to environmental cues, including light, ... -
Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion
Martínez, Diego; Challacombe, Jean; Morgenstern, Ingo; Hibbett, David; Schmoll, Monika; Kubicek, Christian P.; Ferreira, Patricia; Pisabarro de Lucas, Gerardo ; Lavín Trueba, José Luis ; Oguiza Tomé, José Antonio (National Academy of Sciences, 2009)
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Brown-rot fungi such as Postia placenta are common inhabitants of forest ecosystems and are also largely responsible for the destructive decay of wooden structures. Rapid depolymerization of cellulose is a distinguishing ... -
Genomics and transcriptomics characterization of genes expressed during postharvest at 4 degrees C by the edible basidiomycete Pleurotus ostreatus
Ramírez Nasto, Lucía ; Oguiza Tomé, José Antonio ; Pérez Garrido, María Gumersinda ; Lavín Trueba, José Luis ; Omarini, Alejandra; Santoyo Santos, Francisco ; Alfaro Sánchez, Manuel ; Castanera Andrés, Raúl ; Parenti, Alejandra ; Muguerza Domínguez, Elaia ; Pisabarro de Lucas, Gerardo (Viguera Editores, S. L., 2011)
Artículo / Artikulua
Pleurotus ostreatus is an industrially cultivated basidiomycete with nutritional and environmental applications. Its genome, which was sequenced by the joint Genome Institute, has become a model for lignin degradation ... -
Highly expressed captured genes and cross-kingdom domains present in Helitrons create novel diversity in Pleurotus ostreatus and other fungi
Castanera Andrés, Raúl ; Pérez Garrido, María Gumersinda ; López Varas, Leticia ; Sancho, Rubén; Santoyo Santos, Francisco ; Alfaro Sánchez, Manuel ; Gabaldón Estevan, Juan Antonio; Pisabarro de Lucas, Gerardo ; Oguiza Tomé, José Antonio ; Ramírez Nasto, Lucía (BioMed Central, 2014)
Artículo / Artikulua
Background: Helitrons are class-II eukaryotic transposons that transpose via a rolling circle mechanism. Due to their ability to capture and mobilize gene fragments, they play an important role in the evolution of their ... -
LysM proteins in mammalian fungal pathogens
Oguiza Tomé, José Antonio (Elsevier, 2022)
Artículo / Artikulua
The LysM domain is a highly conserved carbohydrate-binding module that recognizes polysaccharides containing N-acetylglucosamine residues. LysM domains are found in a wide variety of extracellular proteins and receptors ... -
Secretomes of medically important fungi reflect morphological and phylogenetic diversity
Varona, Sarai; Lavín Trueba, José Luis; Oguiza Tomé, José Antonio (ElsevierBritish Mycological Society, 2020)
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Secretome represents a main target for understanding the mechanisms of fungal adaptation. In the present study, we focus on the secretomes of fungi associated with infections in humans and other mammals in order to explore ... -
VerSeDa: vertebrate secretome database
Cortázar, Ana R.; Oguiza Tomé, José Antonio ; Aransay, Ana M.; Lavín Trueba, José Luis (Oxford University Press, 2017)
Artículo / Artikulua
Based on the current tools, de novo secretome (full set of proteins secreted by an organism) prediction is a time consuming bioinformatic task that requires a multifactorial analysis in order to obtain reliable in silico ...
