Open Access
Comparison of culturing and metabarcoding methods to describe the fungal endophytic assemblage of brachypodium rupestre growing in a range of anthropized disturbance regimes
(MDPI, 2021) Durán Lázaro, María; San Emeterio Garciandía, Leticia; Canals Tresserras, Rosa María; Agronomia, Bioteknologia eta Elikadura; Institute on Innovation and Sustainable Development in Food Chain - ISFOOD; Agronomía, Biotecnología y Alimentación; Gobierno de Navarra / Nafarroako Gobernua, CENEDUCA18; Universidad Pública de Navarra / Nafarroako Unibertsitate Publikoa
Fungal endophytes develop inside plants without visible external signs, and they may confer adaptive advantages to their hosts. Culturing methods have been traditionally used to recognize the fungal endophytic assemblage, but novel metabarcoding techniques are being increasingly applied. This study aims to characterize the fungal endophytic assemblage in shoots, rhizomes and roots of the tall grass Brachypodium rupestre growing in a large area of natural grasslands with a continuum of anthropized disturbance regimes. Seven out of 88 taxa identified via metabarcoding accounted for 81.2% of the reads (Helotiaceae, Lachnum sp. A, Albotricha sp. A, Helotiales A, Agaricales A, Mycena sp. and Mollisiaceae C), revealing a small group of abundant endophytes and a large group of rare species. Although both methods detected the same trends in richness and fungal diversity among the tissues (root > rhizome > shoot) and grasslands (low-diversity >high-diversity grasslands), the metabarcoding tool identified 5.8 times more taxa than the traditional culturing method (15 taxa) but, surprisingly, failed to sequence the most isolated endophyte on plates, Omnidemptus graminis. Since both methods are still subject to important constraints, both are required to obtain a complete characterization of the fungal endophytic assemblage of the plant species.
Open Access
Restorative pyric herbivory practices in shrub-encroached grasslands enhance nutrient resource availability and spatial heterogeneity
(Elsevier, 2024-05-31) Canals Tresserras, Rosa María; Múgica Azpilicueta, Leire; Durán Lázaro, María; San Emeterio Garciandía, Leticia; Agronomía, Biotecnología y Alimentación; Agronomia, Bioteknologia eta Elikadura; Institute on Innovation and Sustainable Development in Food Chain - ISFOOD
Pyric herbivory (PH), the combination of prescribed burnings and targeted herbivory, is a promising tool for landscape restoration that emulates historical disturbance regimes. Nitrogen (N) and phosphorus (P) are crucial nutrients for plant growth and although several studies have analysed the single effects of fire or grazers in their availability, the combined effect of both disturbances in the soil nutrient budgets have been rarely considered. This research was planned to analyse the 2-year impact of PH restoration practices on the availability of N and P in two Ulex gallii-encroached grasslands in the Pyrenees. We monitored available forms of N and P for two years using periodic replacements of ion exchange resins to test the hypothesis that mid-term effect of targeted grazing was more relevant than short-term effect of burning. Additionally, we investigated the role of temperature and precipitation on nutrients accumulation and compared its significance to management factors. Burning transformed vegetation and litter into a spatially heterogeneous layer of ash and charred material, which resulted in a variable availability of N and P at the rhizosphere level. After two periods of PH, nutrient availability was higher in soils from grazed plots compared to ungrazed, and the impacts of early burns were scarcely discernible. Nitrate was found to be the most rainfall-dependent nutrient, and grazing also affected its spatial distribution. Our results suggest that the heterogeneous nutrient enrichment enhanced by PH is important for promoting the establishment of a diverse pool of plant species, including both N2-fixing and non-fixing species. In these rainy areas, the use of burnings alone, without grazing, may perpetuate the dynamics of N2-fixing shrub encroachment.
Open Access
Interactions between biogeochemical and management factors explain soil organic carbon in Pyrenean grasslands
(Copernicus, 2020) Rodríguez, Antonio; Canals Tresserras, Rosa María; Plaixats Boixadera, J.; Albanell, E.; Debouk, Haifa; Garcia-Pausas, Jordi; San Emeterio Garciandía, Leticia; Ribas, A.; Jiménez, Juan José; Sebastià, M.T.; Agronomia, Bioteknologia eta Elikadura; Institute on Innovation and Sustainable Development in Food Chain - ISFOOD; Agronomía, Biotecnología y Alimentación
Grasslands are one of the major sinks of terrestrial soil organic carbon (SOC). Understanding how environmental and management factors drive SOC is challenging because they are scale-dependent, with large-scale drivers affecting SOC both directly and through drivers working at small scales. Here we addressed how regional, landscape and grazing management, soil properties and nutrients, and herbage quality factors affect 20 cm depth SOC stocks in mountain grasslands in the Pyrenees. Taking advantage of the high variety of environmental heterogeneity in the Pyrenees, we built a dataset (n = 128) that comprises a wide range of environmental and management conditions. This was used to understand the relationship between SOC stocks and their drivers considering multiple environments. We found that temperature seasonality (difference between mean summer temperature and mean annual temperature; TSIS) was the most important geophysical driver of SOC in our study, depending on topography and management. TSIS effects on SOC increased in exposed hillsides, slopy areas, and relatively intensively grazed grasslands. Increased TSIS probably favours plant biomass production, particularly at high altitudes, but landscape and grazing management factors regulate the accumulation of this biomass into SOC. Concerning biochemical SOC drivers, we found unexpected interactive effects between grazer type, soil nutrients and herbage quality. Soil N was a crucial SOC driver as expected but modulated by livestock species and neutral detergent fibre contenting plant biomass; herbage recalcitrance effects varied depending on grazer species. These results highlight the gaps in knowledge about SOC drivers in grasslands under different environmental and management conditions. They may also serve to generate testable hypotheses in later/future studies directed to climate change mitigation policies.
Open Access
Pyric herbivory decreases soil denitrification despite increased nitrate availability in a temperate grassland
(Elsevier, 2024-07-04) Múgica Azpilicueta, Leire; Le Roux, Xavier; San Emeterio Garciandía, Leticia; Cantarel, Amélie; Durán Lázaro, María; Gervaix, Jonathan; Creuzé des Châtelliers, Charline; Canals Tresserras, Rosa María; Agronomía, Biotecnología y Alimentación; Agronomia, Bioteknologia eta Elikadura; Institute on Innovation and Sustainable Development in Food Chain - ISFOOD
Pyric herbivory, the combination of controlled burning and targeted grazing, is an effective strategy for restoring abandoned, shrub-encroached rangelands to open ecosystems. This practice may impact soil nitrogen pools by altering soil nitrification and denitrification rates, and may lead to an increase of nitrogen losses through nitrate leaching and N-gas emissions. This research, located in the south-western Pyrenees, investigated the effects of pyric herbivory on soil nitrification and denitrification potentials and mineral nitrogen content in a gorse-encroached temperate rangeland six months after the burning was implemented. The study included three treatments: high-severity burning plus grazing, low-severity burning plus grazing, and unburned and ungrazed areas (control). We measured soil nitrification and denitrification potentials (net and gross), the limitation of denitrifiers by nitrogen or organic carbon, and the abundance of nitrite- and nitrous oxide-reducing bacteria. Additional soil and vegetation data complemented these measurements. Results showed that pyric herbivory did not significantly affect nitrification potential, which was low and highly variable. However, it decreased gross denitrification potential and nitrous oxide reduction to dinitrogen in high-severely burned areas compared to the control. Denitrification rates directly correlated with microbial biomass nitrogen, soil organic carbon, soil water content and abundance of nirS-harbouring bacteria. Contrary to the expected, soil nitrate availability did not directly influence denitrification despite being highest in burned areas. Overall, the study suggests that pyric herbivory does not significantly affect mid-term nitrification rates in temperate open ecosystems, but may decrease denitrification rates in intensely burned areas. These findings highlight the importance of assessing the potential impacts of land management practices, such as pyric herbivory, on soil nutrient cycling and ecosystem functioning.

San Emeterio Garciandía, Leticia

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