Open Access
Metatranscriptomics sheds light on the links between the functional traits of fungal guilds and ecological processes in forest soil ecosystems
(Blackwell Scientific Publications Ltd, 2023) Auer, Lucas; Buée, Marc; Fauchery, Laure; Lombard, Vincent; Barry, Kerrie; Clum, Alicia; Copeland, Alex; Daum, Chris; LaButti, Kurt; Singan, Vasanth; Yoshinaga, Yuko; Martineau, Christine; Castillo Martínez, Federico; Alfaro Sánchez, Manuel; Imbert Rodríguez, Bosco; Ramírez Nasto, Lucía; Castanera Andrés, Raúl; Pisabarro de Lucas, Gerardo; Finlay, Roger; Lindahl, Björn D.; Olson, Ake; Séguin, Armand; Kohler, Annegret; Henrissat, Bernard; Grigoriev, Igor V.; Martin, Francis; Agronomía, Biotecnología y Alimentación; Agronomia, Bioteknologia eta Elikadura; Institute for Multidisciplinary Research in Applied Biology - IMAB
Soil fungi belonging to different functional guilds, such as saprotrophs, pathogens, and mycorrhizal symbionts, play key roles in forest ecosystems. To date, no study has compared the actual gene expression of these guilds in different forest soils. We used metatranscriptomics to study the competition for organic resources by these fungal groups in boreal, temperate, and Mediterranean forest soils. Using a dedicated mRNA annotation pipeline combined with the JGI MycoCosm database, we compared the transcripts of these three fungal guilds, targeting enzymes involved in C- and N mobilization from plant and microbial cell walls. Genes encoding enzymes involved in the degradation of plant cell walls were expressed at a higher level in saprotrophic fungi than in ectomycorrhizal and pathogenic fungi. However, ectomycorrhizal and saprotrophic fungi showed similarly high expression levels of genes encoding enzymes involved in fungal cell wall degradation. Transcripts for N-related transporters were more highly expressed in ectomycorrhizal fungi than in other groups. We showed that ectomycorrhizal and saprotrophic fungi compete for N in soil organic matter, suggesting that their interactions could decelerate C cycling. Metatranscriptomics provides a unique tool to test controversial ecological hypotheses and to better understand the underlying ecological processes involved in soil functioning and carbon stabilization.
Open Access
¿Están los bosques mixtos pirenaicos de pino silvestre y haya en el camino hacia la saturación por nitrógeno?
(Asociación Española de Ecología Terrestre, 2017) Blanco Vaca, Juan Antonio; San Emeterio Garciandía, Leticia; González de Andrés, Ester; Imbert Rodríguez, Bosco; Larrainzar Rodríguez, Estíbaliz; Peralta de Andrés, Francisco Javier; Lo, Yueh-Hsin; Castillo Martínez, Federico; Ciencias del Medio Natural; Natura Ingurunearen Zientziak
Las actividades humanas causan altos niveles de deposición atmosférica crónica de N que pueden estar trastornando el ciclo del N en los bosques de los Pirineos occidentales. Para probar esta hipótesis, se han investigado los efectos de la deposición de N atmosférico en el ciclo de N en dos bosques mixtos de pino silvestre y haya en Navarra. Un bosque está situado a 1350 m de altitud y tiene un clima continental, mientras que el otro está situado a 650 m y tiene un clima mediterráneo húmedo. Pruebas preliminares indicaron una fijación biológica de N 2 atmosférico indetectable, así como la casi nula presencia de plantas con simbiontes fijadores como en la actividad de fijadores libres. Por lo tanto se asumió que la principal entrada de N en estos bosques es la deposición atmosférica. Se estimó la dependencia de la productividad de estos ecosistemas de la deposición por medio del modelo ecológico FORECAST, calibrado para estos sitios. Se simularon seis escenarios con tasas de deposición en un rango de 5 a 30 kg ha -1 año -1 . Los resultados indicaron que la productividad de estos bosques es dependiente de la deposición de N, pero indicios de saturación por N (aumento de lixiviación y carencia de aumento de productividad) indican que pueden saturarse a partir de 20-25 kg N ha -1 año -1 , unos 5-10 kg N ha -1 año -1 por encima de los niveles observados actualmente.
Open Access
¿Puede haber carrascales en el sur de Navarra? Una aproximación mediante la modelización de distribución de especies
(Asociación Española de Ecología Terrestre, 2013) Peralta de Andrés, Francisco Javier; Zepeda Peña, Norma Angélica; Imbert Rodríguez, Bosco; Ciencias del Medio Natural; Natura Ingurunearen Zientziak
De acuerdo con algunos mapas de vegetación potencial diversos factores climáticos y edáficos limitan el hábitat disponible para los bosques de carrasca (Quercus rotundifolia) en el sur de Navarra (NE de España). Este es un territorio con un intenso y antiguo uso agrícola y ganadero, lo que dificulta valorar si son las variables ambientales o factores antrópicos los que hacen que sean muy escasos los carrascales existentes. Para tratar de responder a la cuestión de si este territorio es adecuado para el desarrollo de carrascales, se construyen modelos de distribución de la carrasca con Maxent y modelos lineales generalizados (GLM), se comparan con mapas de vegetación potencial y con otros modelos generados para esta especie en el conjunto de la península ibérica. Las variables empleadas para construir los modelos son precipitación media de agosto, continentalidad, temperatura media de las máximas de enero, radiación de enero, pendiente y desarrollo del suelo; todas fueron significativas en el GLM. En Maxent la variable con mayor contribución al modelo fue la precipitación de agosto. Los distintos modelos y mapas difieren sobre todo en los límites nordeste y sur de distribución de los carrascales. Los modelos construidos en este trabajo y los ya existentes sugieren que las variables ambientales consideradas no limitan el desarrollo de carrascales, al menos en algunas zonas del tercio meridional de Navarra, no contempladas en los mapas de vegetación potencial tradicionales.
Open Access
Temporal interactions among throughfall, type of canopy and thinning drive radial growth in an Iberian mixed pine-beech forest
(Elsevier, 2018) Cardil Forradellas, Adrián; Imbert Rodríguez, Bosco; Camarero, Jesús Julio; Primicia Alvarez, Irantzu; Castillo Martínez, Federico; Ciencias del Medio Natural; Natura Ingurunearen Zientziak
Many factors can influence tree growth over time such as different forest management practices, climate or tree-to-tree interactions, especially in mixed forests. We show in this work how the temporal growth patterns for Scots pine and European beech depend on thinning intensity (0%, 20% and 40% extraction of basal area), canopy type (pine-beech vs. pine patches), throughfall and their interactions. To fulfill this objective we monitored radial growth of both species using band dendrometers during a 6-year long period including two very dry years. Temporal growth patterns differed between both species. Whereas Scots pine showed two main peaks of growth in May-June and October, European beech mainly grew from May to early September even when throughfall was very limited. Effects of thinning on growth generally increased for both species during dry periods both at the seasonal and annual scales. The treatment with 20% of thinning intensity was the most effective at the annual scale for enhancing growth of both species. However, increases in growth due to thinning were much higher in beech than in pine and lasted longer. Thinning effects on pine were higher in mixed canopy than in pure canopy and appeared to be modulated by throughfall. Global differences in pine growth between canopy types as a function of throughfall increased during the main growing season as beech canopy developed. Growth of Scots pine, but not that of European beech, generally increased with throughfall which suggests that pine might be more dependent for its growth on water from the soil surface layer while beech would depend more on water from deeper soil layers. Our findings have implications to select the most convenient thinning treatments and canopy type under a potential climate change scenario characterized by warmer conditions, more severe droughts and less throughfall.
Open Access
Under-vine cover crops: Impact on physical and biological soil proprieties in an irrigated Mediterranean vineyard
(Elsevier, 2023) Abad Zamora, Francisco Javier; Marín Ederra, Diana; Imbert Rodríguez, Bosco; Virto Quecedo, Íñigo; Garbisu Crespo, Carlos; Santesteban García, Gonzaga; Agronomía, Biotecnología y Alimentación; Agronomia, Bioteknologia eta Elikadura; Ciencias; Zientziak; Gobierno de Navarra / Nafarroako Gobernua, 0011-1383-2022-000000
We present a novel approach to harmonic disturbance removal in single-channel wind turbine acceleration data by means of time-variant signal modeling. Harmonics are conceived as a set of quasi-stationary sinusoids whose instantaneous amplitude and phase vary slowly and continuously in a short-time analysis frame. These non-stationarities in the harmonics are modeled by low-degree time polynomials whose coefficients capture the instantaneous dynamics of the corresponding waveforms. The model is linear-in-parameters and is straightforwardly estimated by the linear least-squares algorithm. Estimates from contiguous analysis frames are further combined in the overlap-add fashion in order to yield overall harmonic disturbance waveform and its removal from the data. The algorithm performance analysis, in terms of input parameter sensitivity and comparison against three state-of-the-art methods, has been carried out with synthetic signals. Further model validation has been accomplished through real-world signals and stabilization diagrams, which are a standard tool for determining modal parameters in many timedomain modal identification algorithms. The results show that the proposed method exhibits a robust performance particularly when only the average rotational speed is known, as is often the case for stand-alone sensors which typically carry out data pre-processing for structural health monitoring. Moreover, for real-world analysis scenarios, we show that the proposed method delivers consistent vibration mode parameter estimates, which can straightforwardly be used for structural health monitoring.
Open Access
ENSO and NAO affect long-term leaf litter dynamics and stoichiometry of Scots pine and European beech mixedwoods
(Wiley, 2019) González de Andrés, Ester; Blanco Vaca, Juan Antonio; Imbert Rodríguez, Bosco; Guan, Biing T.; Lo, Yueh-Hsin; Castillo Martínez, Federico; Ciencias; Zientziak
Litterfall dynamics (production, seasonality and nutrient composition) are key factors influencing nutrient cycling. Leaf litter characteristics are modified by species composition, site conditions and water availability. However, significant evidence on how large-scale, global circulation patterns affect ecophysiological processes at tree and ecosystem level remains scarce due to the difficulty in separating the combined influence of different factors on local climate and tree phenology. To fill this gap, we studied links between leaf litter dynamics with climate and other forest processes, such as tree-ring width (TRW) and intrinsic water-use efficiency (iWUE) in two mixtures of Scots pine (Pinus sylvestris L.) and European beech (Fagus sylvatica L.) in the south-western Pyrenees. Temporal series (18 years) of litterfall production and elemental chemical composition were decomposed following the ensemble empirical mode decomposition (EEMD) method and relationships with local climate, large-scale climatic indices, TRW and Scots pine´s iWUE were assessed. Temporal trends in N:P ratios indicated increasing P-limitation of soil microbes, thus affecting nutrient availability, as the ecological succession from a pine-dominated to a beech-dominated forest took place. A significant influence of large-scale patterns on tree-level ecophysiology was explained through the impact of the North Atlantic Oscillation (NAO) and El Niño – Southern Oscillation (ENSO) on water availability. Positive NAO and negative ENSO were related to dry conditions and, consequently, to early needle shedding and increased N:P ratio of both species. Autumn storm activity appears to be related to premature leaf abscission of European beech. Significant cascading effects from large-scale patterns on local weather influenced pine TRW and iWUE. These variables also responded to leaf stoichiometry fallen three years prior to tree-ring formation. Our results provide evidence of the cascading effect that variability in global climate circulation patterns can have on ecophysiological processes and stand dynamics in mixed forests.
Open Access
Synergies between climate change, biodiversity, ecosystem function and services, indirect drivers of change and human well-being in forests
(Springer, 2021) Imbert Rodríguez, Bosco; Blanco Vaca, Juan Antonio; Candel Pérez, David; Lo, Yueh-Hsin; González de Andrés, Ester; Yeste Yeste, Antonio; Herrera Álvarez, Ximena; Rivadeneira Barba, Gabriela; Liu, Yang; Chang, Shih-Chieh; Ciencias; Zientziak
Climate change is having impacts on the biodiversity and structure of many ecosystems. In this chapter, we focus on its impacts on forests. We will focus on how the potential climate change impacts on forest biodiversity and structure will have a reflection on the ecosystem services provided by forests, and therefore on the capacity of these ecosystems to support the Sustainable Development Goals set by the United Nations. The chapter will be organized in three sections, considering boreal, temperate, and tropical forests along each section. The first section will deal with the synergies or interactions between climate change, biodiversity, and ecosystem function with emphasis not only on plants but also on fungi, animals, and prokaryotes. Synergies between climate change and ecosystem services will be described and analyzed in the second section. To better link the first two sections, we will explore the relationships between ecosystem function, species traits, and ecosystem services. Finally, case studies for boreal, Mediterranean, and tropical forests will be presented, emphasizing the synergies between the above factors, the indirect drivers of change (demographic, economic, sociopolitical, science and technology, culture and religion), and human well-being (basic materials for a good life, health, good social relations, freedom of choice and actions) in forests.
Open Access
SilvAdapt.Net: a site-based network of adaptive forest management related to climate change in Spain
(MDPI, 2021) Molina, Antonio J.; Navarro Cerrillo, Rafael M.; Pérez-Romero, Javier; Alejano, Reyes; Bellot, Juan F.; Blanco Vaca, Juan Antonio; Camarero, Jesús Julio; Carrara, Arnaud; Castillo, Víctor M.; Cervera, Teresa; Barberá, Gonzalo G.; González-Sanchis, María; Hernández, Álvaro; Imbert Rodríguez, Bosco; Jiménez, María N.; Llorens, Pilar; Lucas Borja, Manuel Esteban; Moreno, Gerardo; Moreno de las Heras, Mariano; Navarro, Francisco B.; Palacios, Guillermo; Palero, Noemí; Ripoll, María A.; Regüés, D.; Ruiz Gómez, Francisco Javier; Vilagrosa, Alberto; Campo, Antonio D. del; Ciencias; Zientziak
Adaptive forest management (AFM) is an urgent need because of the uncertainty regarding how changes in the climate will affect the structure, composition and function of forests during the next decades. Current research initiatives for the long-term monitoring of impacts of silviculture are scattered and not integrated into research networks, with the consequent losses of opportunities and capacity for action. To increase the scientiﬁc and practical impacts of these experiences, it is necessary to establish logical frameworks that harmonize the information and help us to deﬁne the most appropriate treatments. In this context, a number of research groups in Spain have produced research achievements and know-how during the last decades that can allow for the improvement in AFM. These groups address the issue of AFM from different ﬁelds, such as ecophysiology, ecohydrology and forest ecology, thus resulting in valuable but dispersed expertise. The main objective of this work is to introduce a comprehensive strategy aimed to study the implementation of AFM in Spain. As a ﬁrst step, a network of 34 experimental sites managed by 14 different research groups is proposed and justiﬁed. As a second step, the most important AFM impacts on Mediterranean pines, as one of the most extended natural and planted forest types in Spain, are presented. Finally, open questions dealing with key aspects when attempting to implement an AFM framework are discussed. This study is expected to contribute to better outlining the procedures and steps needed to implement regional frameworks for AFM.
Open Access
Tree-to-tree competition in mixed European beech-Scots pine forests has different impacts on growth and water-use efficiency depending on site condition.
(Wiley, 2018) González de Andrés, Ester; Camarero, Jesús Julio; Blanco Vaca, Juan Antonio; Imbert Rodríguez, Bosco; Lo, Yueh-Hsin; Sangüesa Barreda, G.; Castillo Martínez, Federico; Ciencias del Medio Natural; Natura Ingurunearen Zientziak
Mixed conifer-hardwood forests can be more productive than pure forests and they are increasingly considered as ecosystems that could provide adaptation strategies in the face of global change. However, the combined effects of tree-to-tree competition, rising atmospheric CO2 concentrations and climate on such mixtures remain poorly characterized and understood.2. To fill this research gap, we reconstructed 34-year series (1980-2013) of growth (basal area increment, BAI) and intrinsic water-use efficiency (iWUE) of Scots pine (Pinus sylvestris L.)-European beech (Fagus sylvatica L.) mixed stands at two climati-cally contrasting sites located in the southwestern Pyrenees. We also gathered data on tree-to-tree competition and climate variables in order to test the hypotheses that (1) radial growth will be greater when exposed to inter- than to intraspecific competition, that is, when species complementarity occurs and (2) enhanced iWUE could be linked to improved stem radial growth.3. Growth of both species was reduced when intraspecific competition increased. Species complementarity was linked to improved growth of Scots pine at the continental site, while competition overrode any complementarity advantage at the drought-prone Mediterranean site. Beech growth did not show any significant response to pine admixture likely due to shade tolerance and the highly competitive nature of this species. Increasing interspecific competition drove recent iWUE changes, which increased in Scots pine but decreased in European beech. The iWUE enhancement did not involve any growth improvement in Scots pine. However, the positive BAIiWUE relationship found for beech suggests an enhanced beech growth in drought-prone sites due to improved water use.4. Synthesis. Complementarity may enhance growth in mixed forests. However, water scarcity can constrict light-related complementarity for shade intolerant species (Scots pine) in drought-prone sites. Basal area increment-intrinsic water-use efficiency relationships were negative for Scots pine and positive for European beech. These contrasting behaviours have got implications for coping with the expected increasing drought events in Scots pine-European beech mixtures located near ecological limit of the two species. Complementarity effects between tree species should be considered to avoid overestimating the degree of future carbon uptake by mixed conifer¿broadleaf forests.
Open Access
8ª Edición de la Escuela de verano de Ecología de Navarra: ecólogas/os por un día
(Asociación Española de Ecología Terrestre, AEET, 2022) Imbert Rodríguez, Bosco; Blanco Vaca, Juan Antonio; Ciencias; Zientziak; Institute for Multidisciplinary Research in Applied Biology - IMAB
Durante los pasados 23 y 24 de junio tuvo lugar la 8ª edición de la Escuela de Verano de Ecología de Navarra de la Universidad Pública de Navarra (UPNA) con el título ‘Ecólogas/os por un día’. En la jornada se impartieron cuatro ponencias por parte de los miembros del grupo de investigación de Ecología y Medio Ambiente de la Universidad Pública de Navarra, pero la mayor parte del tiempo se dedicó al trabajo de campo en el parque. En dicho trabajo de campo los asistentes pudieron trabajar tres temas diferentes: el estudio de las comunidades vegetales en pastos, el estudio de la estructura de una comunidad arbórea y la observación y estimación de censos de aves. Los trabajos incluyeron la demostración y familiarización de los estudiantes con las distintas técnicas y aparatos para medir variables ambientales como luz ambiental, temperatura del suelo, humedad del suelo, diámetro y altura de árboles, así como las técnicas para realizar inventarios florísticos o de fauna.