Open Access
On the role of distance transformations in Baddeley's Delta Metric
(Elsevier, 2021) López Molina, Carlos; Iglesias Rey, Sara; Bustince Sola, Humberto; Baets, Bernard de; Estadística, Informática y Matemáticas; Estatistika, Informatika eta Matematika
Comparison and similarity measurement have been a key topic in computer vision for a long time. There is, indeed, an extensive list of algorithms and measures for image or subimage comparison. The superiority or inferiority of different measures is hard to scrutinize, especially considering the dimensionality of their parameter space and their many different configurations. In this work, we focus on the comparison of binary images, and study different variations of Baddeley's Delta Metric, a popular metric for such images. We study the possible parameterizations of the metric, stressing the numerical and behavioural impact of different settings. Specifically, we consider the parameter settings proposed by the original author, as well as the substitution of distance transformations by regularized distance transformations, as recently presented by Brunet and Sills. We take a qualitative perspective on the effects of the settings, and also perform quantitative experiments on separability of datasets for boundary evaluation.
Open Access
Hyperspectral imaging to assess the presence of powdery mildew (Erysiphe necator) in cv. Carignan Noir grapevine bunches
(MDPI, 2020) Pérez Roncal, Claudia; López Maestresalas, Ainara; López Molina, Carlos; Jarén Ceballos, Carmen; Urrestarazu Vidart, Jorge; Santesteban García, Gonzaga; Arazuri Garín, Silvia; Ingeniería; Estadística, Informática y Matemáticas; Agronomía, Biotecnología y Alimentación; Ingeniaritza; Estatistika, Informatika eta Matematika; Agronomia, Bioteknologia eta Elikadura; Gobierno de Navarra / Nafarroako Gobernua, Proyecto DECIVID (Res.104E/2017); Universidad Pública de Navarra / Nafarroako Unibertsitate Publikoa, FPI-UPNA-2017 (Res.654/2017)
Powdery mildew is a worldwide major fungal disease for grapevine, which adversely affects both crop yield and produce quality. Disease identification is based on visible signs of a pathogen once the plant has already been infected; therefore, techniques that allow objective diagnosis of the disease are currently needed. In this study, the potential of hyperspectral imaging (HSI) technology to assess the presence of powdery mildew in grapevine bunches was evaluated. Thirty Carignan Noir grape bunches, 15 healthy and 15 infected, were analyzed using a lab-scale HSI system (900–1700 nm spectral range). Image processing was performed to extract spectral and spatial image features and then, classification models by means of Partial Least Squares Discriminant Analysis (PLS-DA) were carried out for healthy and infected pixels distinction within grape bunches. The best discrimination was achieved for the PLS-DA model with smoothing (SM), Standard Normal Variate (SNV) and mean centering (MC) pre-processing combination, reaching an accuracy of 85.33% in the cross-validation model and a satisfactory classification and spatial location of either healthy or infected pixels in the external validation. The obtained results suggested that HSI technology combined with chemometrics could be used for the detection of powdery mildew in black grapevine bunches.
Open Access
Is the phenotype designation by PSP-MDS criteria stable throughout the disease course and consistent with tau distribution?
(Frontiers Media, 2022) Sánchez Ruiz de Gordoa, Javier; Zelaya Huerta, María Victoria; Tellechea-Aramburo, Paula; Acha Santamaría, Blanca; Roldán, Miren; López Molina, Carlos; Coca, Valle; Galbete Jiménez, Arkaitz; Mendióroz Iriarte, Maite; Erro Aguirre, María Elena; Estadística, Informática y Matemáticas; Estatistika, Informatika eta Matematika
Introduction: the MDS-PSP criteria have shown high sensitivity for the PSP diagnosis, but do not discriminate the phenotype diversity. Our purpose was to search for anatomopathological differences among PSP phenotypes resulting from the application of the MDS-PSP criteria comparing with the previous ones. Methods: thirty-four PSP cases from a single brain bank were retrospectively classified according to the criteria used by Respondek et al. in 2014 and the PSP-MDS criteria at 3 years (MDS-3y), 6 years (MDS-6y) and at the last clinical evaluation before death (MDS-last). Semiquantitative measurement of total, cortical and subcortical tau load was compared. For comparative analysis, PSP-Richardson syndrome and PSP postural instability were grouped (PSP-RS/PI) as well as the PSP atypical cortical phenotypes (PSP-Cx). Results: applying the Respondek's criteria, PSP phenotypes were distributed as follow: 55.9% PSP-RS/PI, 26.5% PSP-Cx, 11.8% PSP-Parkinsonism (PSP-P), and 5.9% PSP-Cerebellum. PSP-RS/PI and PSP-Cx had a higher total tau load than PSP-P; PSP-Cx showed a higher cortical tau load than PSP-RS/PI and PSP-P; and PSP-RS/PI had a higher subcortical tau load than PSP-P. Applying the MDS-3y, MDS-6y and MDS-last criteria; the PSP-RS/PI group increased (67.6, 70.6 and 70.6% respectively) whereas the PSP-Cx group decreased (8.8, and 8.8 and 11.8%). Then, only differences in total and subcortical tau burden between PSP-RS/PI and PSP-P were observed. Interpretation: after the retrospective application of the new MDS-PSP criteria, total and subcortical tau load is higher in PSP-RS/PI than in PSP-P whereas no other differences in tau load between phenotypes were found, as a consequence of the loss of phenotypic diversity.
Open Access
Neuro-inspired edge feature fusion using Choquet integrals
(Elsevier, 2021) Marco Detchart, Cedric; Lucca, Giancarlo; López Molina, Carlos; Miguel Turullols, Laura de; Pereira Dimuro, Graçaliz; Bustince Sola, Humberto; Estadística, Informática y Matemáticas; Estatistika, Informatika eta Matematika; Universidad Pública de Navarra / Nafarroako Unibertsitate Publikoa
It is known that the human visual system performs a hierarchical information process in which early vision cues (or primitives) are fused in the visual cortex to compose complex shapes and descriptors. While different aspects of the process have been extensively studied, such as lens adaptation or feature detection, some other aspects, such as feature fusion, have been mostly left aside. In this work, we elaborate on the fusion of early vision primitives using generalizations of the Choquet integral, and novel aggregation operators that have been extensively studied in recent years. We propose to use generalizations of the Choquet integral to sensibly fuse elementary edge cues, in an attempt to model the behaviour of neurons in the early visual cortex. Our proposal leads to a fully-framed edge detection algorithm whose performance is put to the test in state-of-the-art edge detection datasets.
Open Access
From restricted equivalence functions on Ln to similarity measures between fuzzy multisets
(IEEE, 2023) Ferrero Jaurrieta, Mikel; Takáč, Zdenko; Rodríguez Martínez, Iosu; Marco Detchart, Cedric; Bernardini, Ángela; Fernández Fernández, Francisco Javier; López Molina, Carlos; Bustince Sola, Humberto; Estadística, Informática y Matemáticas; Estatistika, Informatika eta Matematika
Restricted equivalence functions are well-known functions to compare two numbers in the interval between 0 and 1. Despite the numerous works studying the properties of restricted equivalence functions and their multiple applications as support for different similarity measures, an extension of these functions to an n-dimensional space is absent from the literature. In this paper, we present a novel contribution to the restricted equivalence function theory, allowing to compare multivalued elements. Specifically, we extend the notion of restricted equivalence functions from L to L n and present a new similarity construction on L n . Our proposal is tested in the context of color image anisotropic diffusion as an example of one of its many applications.
Open Access
Proyecto Agroinc: prevención del impacto ambiental de incendios provocados por cosechadoras
(Interempresas Media, 2022) Arazuri Garín, Silvia; Mangado Ederra, Jesús; López Maestresalas, Ainara; López Molina, Carlos; Angulo Muñoz, Blanca; Arnal Atarés, Pedro; Jarén Ceballos, Carmen; Ingeniería; Ingeniaritza; Estadística, Informática y Matemáticas; Estatistika, Informatika eta Matematika; Proyectos e Ingeniería Rural; Landa Ingeniaritza eta Proiektuak; Institute on Innovation and Sustainable Development in Food Chain - ISFOOD; Gobierno de Navarra / Nafarroako Gobernua
Las cosechadoras de cereales, por las condiciones ambientales en las que trabajan, alta temperatura y baja humedad, tanto ambiental como del producto que están cosechando, pueden provocar accidentalmente incendios durante la época de recolección. Los daños económicos y medioambientales que estos incendios suponen pueden ser muy importantes, ya que las condiciones de propagación del fuego son óptimas. Los principales objetivos de este proyecto han sido evaluar el impacto ambiental de los incendios producidos en Navarra en los últimos años y establecer una guía de buenas prácticas para su prevención.
Open Access
Operador de comparación de elementos multivaluados basado en funciones de equivalencia restringida
(Universidad de Málaga, 2021) Castillo López, Aitor; López Molina, Carlos; Fernández Fernández, Francisco Javier; Sesma Sara, Mikel; Bustince Sola, Humberto; Estadística, Informática y Matemáticas; Estatistika, Informatika eta Matematika
En este trabajo proponemos un nuevo enfoque del algoritmo de clustering gravitacional basado en lo que Einstein considero su 'mayor error': la constante cosmológica. De manera similar al algoritmo de clustering gravitacional, nuestro enfoque está inspirado en principios y leyes del cosmos, y al igual que ocurre con la teoría de la relatividad de Einstein y la teoría de la gravedad de Newton, nuestro enfoque puede considerarse una generalización del agrupamiento gravitacional, donde, el algoritmo de clustering gravitacional se recupera como caso límite. Además, se desarrollan e implementan algunas mejoras que tienen como objetivo optimizar la cantidad de iteraciones finales, y de esta forma, se reduce el tiempo de ejecución tanto para el algoritmo original como para nuestra versión.
Open Access
Evaluation of near-infrared hyperspectral imaging for the assessment of potato processing aptitude
(Frontiers Media, 2022) López Maestresalas, Ainara; López Molina, Carlos; Oliva Lobo, Gil Alfonso; Jarén Ceballos, Carmen; Ruiz de Galarreta, José Ignacio; Peraza Alemán, Carlos Miguel; Arazuri Garín, Silvia; Ingeniaritza; Estatistika, Informatika eta Matematika; Institute on Innovation and Sustainable Development in Food Chain - ISFOOD; Ingeniería; Estadística, Informática y Matemáticas
The potato (Solanum tuberosum L.) is the world's fifth most important staple food with high socioeconomic relevance. Several potato cultivars obtained by selection and crossbreeding are currently on the market. This diversity causes tubers to exhibit different behaviors depending on the processing to which they are subjected. Therefore, it is interesting to identify cultivars with specific characteristics that best suit consumer preferences. In this work, we present a method to classify potatoes according to their cooking or frying as crisps aptitude using NIR hyperspectral imaging (HIS) combined with a Partial Least Squares Discriminant Analysis (PLS-DA). Two classification approaches were used in this study. First, a classification model using the mean spectra of a dataset composed of 80 tubers belonging to 10 different cultivars. Then, a pixel-wise classification using all the pixels of each sample of a small subset of samples comprised of 30 tubers. Hyperspectral images were acquired using fresh-cut potato slices as sample material placed on a mobile platform of a hyperspectral system in the NIR range from 900 to 1,700 nm. After image processing, PLS-DA models were built using different pre-processing combinations. Excellent accuracy rates were obtained for the models developed using the mean spectra of all samples with 90% of tubers correctly classified in the external dataset. Pixel-wise classification models achieved lower accuracy rates between 66.62 and 71.97% in the external validation datasets. Moreover, a forward interval PLS (iPLS) method was used to build pixel-wise PLS-DA models reaching accuracies above 80 and 71% in cross-validation and external validation datasets, respectively. Best classification result was obtained using a subset of 100 wavelengths (20 intervals) with 71.86% of pixels correctly classified in the validation dataset. Classification maps were generated showing that false negative pixels were mainly located at the edges of the fresh-cut slices while false positive were principally distributed at the central pith, which has singular characteristics.
Open Access
Applications of sensing for disease detection
(Springer, 2021) Castro, Ana Isabel de; Pérez Roncal, Claudia; Thomasson, J. Alex; Ehsani, Reza; López Maestresalas, Ainara; Yang, Chenghai; Jarén Ceballos, Carmen; Wang, Tianyi; Cribben, Curtis; Marín Ederra, Diana; Isakeit, Thomas; Urrestarazu Vidart, Jorge; López Molina, Carlos; Wang, Xiwei; Nichols, Robert L.; Santesteban García, Gonzaga; Arazuri Garín, Silvia; Peña, José Manuel; Agronomía, Biotecnología y Alimentación; Agronomia, Bioteknologia eta Elikadura; Estadística, Informática y Matemáticas; Estatistika, Informatika eta Matematika; Ingeniería; Ingeniaritza; Gobierno de Navarra / Nafarroako Gobernua; Universidad Pública de Navarra / Nafarroako Unibertsitate Publikoa
The potential loss of world crop production from the effect of pests, including weeds, animal pests, pathogens and viruses has been quantifed as around 40%. In addition to the economic threat, plant diseases could have disastrous consequences for the environment. Accurate and timely disease detection requires the use of rapid and reliable techniques capable of identifying infected plants and providing the tools required to implement precision agriculture strategies. The combination of suitable remote sensing (RS) data and advanced analysis algorithms makes it possible to develop prescription maps for precision disease control. This chapter shows some case studies on the use of remote sensing technology in some of the world’s major crops; namely cotton, avocado and grapevines. In these case studies, RS has been applied to detect disease caused by fungi using different acquisition platforms at different scales, such as leaf-level hyperspectral data and canopy-level remote imagery taken from satellites, manned airplanes or helicopter, and UAVs. The results proved that remote sensing is useful, effcient and effective for identifying cotton root rot zones in cotton felds, laurel wilt-infested avocado trees and escaaffected vines, which would allow farmers to optimize inputs and feld operations, resulting in reduced yield losses and increased profts.
Open Access
A framework for active contour initialization with application to liver segmentation in MRI
(Springer, 2022) Mir Torres, Arnau; Antunes dos Santos, Felipe; Fernández Fernández, Francisco Javier; López Molina, Carlos; Estadística, Informática y Matemáticas; Estatistika, Informatika eta Matematika
Object segmentation is a prominent low-level task in image processing and computer vision. A technique of special relevance within segmentation algorithms is active contour modeling. An active contour is a closed contour on an image which can be evolved to progressively fit the silhouette of certain area or object. Active contours shall be initialized as a closed contour at some position of the image, further evolving to precisely fit to the silhouette of the object of interest. While the evolution of the contour has been deeply studied in literature [5, 11], the study of strategies to define the initial location of the contour is rather absent from it. Typically, such contour is created as a small closed curve around an inner position in the object. However, literature contains no general-purpose algorithms to determine those inner positions, or to quantify their fitness. In fact, such points are frequently set manually by human experts, hence turning the segmentation process into a semi-supervised one. In this work, we present a method to find inner points in relevant object using spatial-tonal fuzzy clustering. Our proposal intends to detect dominant clusters of bright pixels, which are further used to identify candidate points or regions around which active contours can be initialized.