Now showing items 1-20 of 40

    • Advanced studies of yeast metabolism under winemaking conditions. Paving the way for a predictive model 

      Martínez Moreno, Rubén (2014)   Tesis doctoral / Doktoretza tesia  OpenAccess
      En esta tesis doctoral se presenta una nueva metodología para el estudio de la fisiología y del metabolismo de Saccharomyces cerevisiae durante la fermentación alcohólica que tienen lugar en el proceso de vinificación. ...
    • Basidiomycetes telomeres: a bioinformatics approach 

      Ramírez Nasto, Lucía Upna Orcid; Pérez Garrido, Gumersinda Upna Orcid; Castanera Andrés, Raúl Upna Orcid; Santoyo Santos, Francisco Upna; Pisabarro de Lucas, Gerardo Upna Orcid (InTechOpen, 2011)   Capítulo de libro / Liburuen kapitulua  OpenAccess
      The bioinformatics analysis described in this paper allowed us to establish the type and the number of the telomere repeat unit in the basidiomycetes analyzed, to suggest the putative linkage groups in fungi where linkage ...
    • Biological pretreatment of rice husks with the white-rot fungus pleurotus ostreatus: the role of laccase activity 

      Durán Sequeda, Dinary Eloísa (2021)   Tesis doctoral / Doktoretza tesia
      El objetivo principal de la investigación fue determinar la influencia de la composición del medio de cultivo y los compuestos lignocelulósicos en la secreción de enzimas lacasas por P. ostreatus en cultivos sumergidos. ...
    • Comparative and transcriptional analysis of the predicted secretome in the lignocellulose-degrading basidiomycete fungus Pleurotus ostreatus 

      Alfaro Sánchez, Manuel Upna Orcid; Castanera Andrés, Raúl Upna Orcid; Lavín Trueba, José Luis Upna; Oguiza Tomé, José Antonio Upna Orcid; Ramírez Nasto, Lucía Upna Orcid; Pisabarro de Lucas, Gerardo Upna Orcid (WileySociety for Applied Microbiology, 2016)   Artículo / Artikulua  OpenAccess
      Fungi interact with their environment by secreting proteins to obtain nutrients, elicit responses and modify their surroundings. Because the set of proteins secreted by a fungus is related to its lifestyle, it should be ...
    • Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis 

      Fernández Fueyo, Elena; Ruiz Dueñas, Francisco J.; Ferreira, Patricia; Floudas, Dimitrios; Lavín Trueba, José Luis Upna; Oguiza Tomé, José Antonio Upna Orcid; Pérez Garrido, Gumersinda Upna Orcid; Pisabarro de Lucas, Gerardo Upna Orcid; Ramírez Nasto, Lucía Upna Orcid; Santoyo Santos, Francisco Upna (National Academy of Sciences, 2012)   Artículo / Artikulua  OpenAccess
      Efficient lignin depolymerization is unique to the wood decay basidiomycetes, collectively referred to as white rot fungi. Phanerochaete chrysosporium simultaneously degrades lignin and cellulose, whereas the closely related ...
    • Comparative genomics of Coniophora olivacea reveals different patterns of genome expansion in Boletales 

      Castanera Andrés, Raúl Upna Orcid; Pérez Garrido, Gumersinda Upna Orcid; López Varas, Leticia Upna; Amselem, Joëlle; LaButti, Kurt; Singan, Vasanth; Lipzen, Anna; Haridas, Sajeet; Barry, Kerrie; Grigoriev, Igor V.; Pisabarro de Lucas, Gerardo Upna Orcid; Ramírez Nasto, Lucía Upna Orcid (BioMed Central, 2017)   Artículo / Artikulua  OpenAccess
      Background: Coniophora olivacea is a basidiomycete fungus belonging to the order Boletales that produces brown-rot decay on dead wood of conifers. The Boletales order comprises a diverse group of species including saprotrophs ...
    • Computational prediction of protein-coding gene and annotation of DNA sequences with agronomic interest in Pleurotus ostreatus (Oyster Mushroom) 

      Palma Dovis, Leopoldo Upna Orcid; Peñas Parrila, María Manuela; Ramírez Nasto, Lucía Upna Orcid; Pisabarro de Lucas, Gerardo Upna Orcid (Universidad Pública de Navarra / Nafarroako Unibertsitate Publikoa, 2006)   Contribución a congreso / Biltzarrerako ekarpena  OpenAccess
      Pleurotus ostreatus, commonly known as oyster mushroom, is a commercially important edible fungus with interesting biotechnological properties. Quantitative trait loci (QTL) analyses are rare in fungi and little is known ...
    • Diffusional properties of methanogenic granular sludge: 1H NMR characterization 

      Lens, Piet N. L.; Gastesi Barasoain, Rakel Upna; Vergeldt, Frank; Aelst, Adriaan C. van; Pisabarro de Lucas, Gerardo Upna Orcid; As, Henk van (American Society for Microbiology, 2003)   Artículo / Artikulua  OpenAccess
      The diffusive properties of anaerobic methanogenic and sulfidogenic aggregates present in wastewater treatment bioreactors were studied using diffusion analysis by relaxation time-separated pulsed-field gradient nuclear ...
    • Effect of nutritional factors and copper on the regulation of laccase enzyme production in Pleurotus ostreatus 

      Durán Sequeda, Dinary Eloísa; Suspes, Daniela; Maestre, Estibenson; Alfaro Sánchez, Manuel Upna Orcid; Pérez Garrido, Gumersinda Upna Orcid; Ramírez Nasto, Lucía Upna Orcid; Pisabarro de Lucas, Gerardo Upna Orcid; Sierra Ramírez, Rocío (MDPI, 2022)   Artículo / Artikulua  OpenAccess
      This research aimed to establish the relationship between carbon–nitrogen nutritional factors and copper sulfate on laccase activity (LA) by Pleurotus ostreatus. Culture media composition was tested to choose the nitrogen ...
    • Enzymatic characterization of a monokaryon population of the edible mushroom, Pleurotus ostreatus with a view to genetic improvement 

      Terrón, María del Carmen; López, María; Carbajo, José M.; Pisabarro de Lucas, Gerardo Upna Orcid; Ramírez Nasto, Lucía Upna Orcid; González Aldo, E. (Universidad Pública de Navarra / Nafarroako Unibertsitate Publikoa, 2006)   Contribución a congreso / Biltzarrerako ekarpena  OpenAccess
      In this work the lignocellulolytic enzymes produced by the edible mushroom Pleurotus ostreatus var. florida were studied. The objective was to know their relationship with the degradation of the biopolymers present in ...
    • Expansion of signal transduction pathways in fungi by extensive genome duplication 

      Corrochano, Luis M.; Kuo, Alan; Marcet Houben, Marina; Oguiza Tomé, José Antonio Upna Orcid; Pisabarro de Lucas, Gerardo Upna Orcid (CellPress, 2016)   Artículo / Artikulua  OpenAccess
      Plants and fungi use light and other signals to regulate development, growth, and metabolism. The fruiting bodies of the fungus Phycomyces blakesleeanus are single cells that react to environmental cues, including light, ...
    • Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi 

      Riley, Robert; Salamov, Asaf A.; Brown, Daren W.; Nagy, Laszlo G.; Floudas, Dimitrios; Held, Benjamin W.; Levasseur, Anthony; Lombard, Vincent; Morin, Emmanuelle; Pisabarro de Lucas, Gerardo Upna Orcid (National Academy of Sciences, 2014)   Artículo / Artikulua  OpenAccess
      Basidiomycota (basidiomycetes) make up 32% of the described fungi and include most wood-decaying species, as well as pathogens and mutualistic symbionts. Wood-decaying basidiomycetes have typically been classified as either ...
    • Genetic breeding of edible mushrooms: from the genome to the production of new varieties of Pleurotus ostreatus 

      Pisabarro de Lucas, Gerardo Upna Orcid; Peñas Parrila, María Manuela; Pérez Garrido, Gumersinda Upna Orcid; Park, Sang-Kyu Upna; Eizmendi Goicoechea, Arantza; Parada Albarracín, Julián Andrés Upna Orcid; Palma Dovis, Leopoldo Upna Orcid; Idareta Olagüe, Eneko Upna; Jurado Cabanillas, Javier Upna; Castellón Gadea, Jordi Upna; Ramírez Nasto, Lucía Upna Orcid (Universidad Pública de Navarra / Nafarroako Unibertsitate Publikoa, 2006)   Contribución a congreso / Biltzarrerako ekarpena  OpenAccess
      The breeding of new varieties of industrially cultivated edible mushrooms must proceed in the framework defined by the breeding objectives, the biological characteristics of the material and the legal and cultural ...
    • Genetic linkage map of the edible basidiomycete Pleurotus ostreatus 

      Larraya Reta, Luis María Upna Orcid; Pérez Garrido, Gumersinda Upna Orcid; Ritter, Enrique; Pisabarro de Lucas, Gerardo Upna Orcid; Ramírez Nasto, Lucía Upna Orcid (American Society for Microbiology, 2000)   Artículo / Artikulua  OpenAccess
      We have constructed a genetic linkage map of the edible basidiomycete Pleurotus ostreatus (var. Florida). The map is based on the segregation of 178 random amplified polymorphic DNA and 23 restriction fragment length polymorphism ...
    • Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion 

      Martínez, Diego; Challacombe, Jean; Morgenstern, Ingo; Hibbett, David; Schmoll, Monika; Kubicek, Christian P.; Ferreira, Patricia; Pisabarro de Lucas, Gerardo Upna Orcid; Lavín Trueba, José Luis Upna; Oguiza Tomé, José Antonio Upna Orcid (National Academy of Sciences, 2009)   Artículo / Artikulua  OpenAccess
      Brown-rot fungi such as Postia placenta are common inhabitants of forest ecosystems and are also largely responsible for the destructive decay of wooden structures. Rapid depolymerization of cellulose is a distinguishing ...
    • Genomic analysis enlightens agaricales lifestyle evolution and increasing peroxidase diversity 

      Ruiz Dueñas, Francisco J.; Barrasa, José M.; Sánchez-García, Marisol; Camarero, Susana; Miyauchi, Shingo; Linde, Dolores; Babiker, Rashid; Drula, Elodie; Ayuso-Fernández, Iván; Pacheco, Remedios; Padilla, Guillermo; Ferreira, Patricia; Barriuso, Jorge; Kellner, Harald; Castanera Andrés, Raúl Upna Orcid; Alfaro Sánchez, Manuel Upna Orcid; Ramírez Nasto, Lucía Upna Orcid; Pisabarro de Lucas, Gerardo Upna Orcid; Riley, Robert; Kuo, Alan; Andreopoulos, William; LaButti, Kurt; Pangilinan, Jasmyn; Tritt, Andrew; Lipzen, Anna; He, Guifen; Yan, Mi; Vivian, Ng; Grigoriev, Igor V.; Cullen, Daniel; Martin, Francis; Rosso, Marie-Noëlle; Henrissat, Bernard; Hibbett, David; Martínez, Ángel T.; Serrano, Ana (Oxford University Press, 2021)   Artículo / Artikulua  OpenAccess
      As actors of global carbon cycle, Agaricomycetes (Basidiomycota) have developed complex enzymatic machineries that allow them to decompose all plant polymers, including lignin. Among them, saprotrophic Agaricales are ...
    • Genomic, transcriptomic and proteomic analysis of Pleurotus ostreatus secreted proteins 

      Alfaro Sánchez, Manuel Upna Orcid (2017)   Tesis doctoral / Doktoretza tesia  OpenAccess
      The objective of this thesis is to study the proteins secreted by the edible and worldwide cultivated white rot basidiomycete fungus Pleurotus ostreatus with three major goals: to determine the set of proteins secreted ...
    • Genomics and transcriptomics characterization of genes expressed during postharvest at 4 degrees C by the edible basidiomycete Pleurotus ostreatus 

      Ramírez Nasto, Lucía Upna Orcid; Oguiza Tomé, José Antonio Upna Orcid; Pérez Garrido, Gumersinda Upna Orcid; Lavín Trueba, José Luis Upna; Omarini, Alejandra; Santoyo Santos, Francisco Upna; Alfaro Sánchez, Manuel Upna Orcid; Castanera Andrés, Raúl Upna Orcid; Parenti, Alejandra Upna; Muguerza Domínguez, Elaia Upna; Pisabarro de Lucas, Gerardo Upna Orcid (Viguera Editores, S. L., 2011)   Artículo / Artikulua  OpenAccess
      Pleurotus ostreatus is an industrially cultivated basidiomycete with nutritional and environmental applications. Its genome, which was sequenced by the joint Genome Institute, has become a model for lignin degradation ...
    • Glucose counteracts wood-dependent induction of lignocellulolytic enzyme secretion in monokaryon and dikaryon submerged cultures of the white-rot basidiomycete Pleurotus ostreatus 

      Alfaro Sánchez, Manuel Upna Orcid; Majcherczyk, A.; Kües, Ursula; Ramírez Nasto, Lucía Upna Orcid; Pisabarro de Lucas, Gerardo Upna Orcid (Nature Research, 2020)   Artículo / Artikulua  OpenAccess
      The secretome complexity and lignocellulose degrading capacity of Pleurotus ostreatus monokaryons mkPC9 and mkPC15 and mated dikaryon dkN001 were studied in submerged liquid cultures containing wood, glucose, and wood plus ...
    • Highly expressed captured genes and cross-kingdom domains present in Helitrons create novel diversity in Pleurotus ostreatus and other fungi 

      Castanera Andrés, Raúl Upna Orcid; Pérez Garrido, Gumersinda Upna Orcid; López Varas, Leticia Upna; Sancho, Rubén; Santoyo Santos, Francisco Upna; Alfaro Sánchez, Manuel Upna Orcid; Gabaldón Estevan, Juan Antonio; Pisabarro de Lucas, Gerardo Upna Orcid; Oguiza Tomé, José Antonio Upna Orcid; Ramírez Nasto, Lucía Upna Orcid (BioMed Central, 2014)   Artículo / Artikulua  OpenAccess
      Background: Helitrons are class-II eukaryotic transposons that transpose via a rolling circle mechanism. Due to their ability to capture and mobilize gene fragments, they play an important role in the evolution of their ...