Now showing items 1-8 of 8

    • Comparative and transcriptional analysis of the predicted secretome in the lignocellulose-degrading basidiomycete fungus Pleurotus ostreatus 

      Alfaro Sánchez, Manuel Upna Orcid; Castanera Andrés, Raúl Upna Orcid; Lavín Trueba, José Luis Upna; Oguiza Tomé, José Antonio Upna Orcid; Ramírez Nasto, Lucía Upna Orcid; Pisabarro de Lucas, Gerardo Upna Orcid (WileySociety for Applied Microbiology, 2016)   Artículo / Artikulua  OpenAccess
      Fungi interact with their environment by secreting proteins to obtain nutrients, elicit responses and modify their surroundings. Because the set of proteins secreted by a fungus is related to its lifestyle, it should be ...
    • Comparative genomic analysis of two-component regulatory proteins in pseudomonas syringae 

      Lavín Trueba, José Luis Upna; Kiil, Kristoffer; Resano, Ohiana Upna; Ussery, David W.; Oguiza Tomé, José Antonio Upna Orcid (BioMed Central, 2007)   Artículo / Artikulua  OpenAccess
      Background: Pseudomonas syringae is a widespread bacterial plant pathogen, and strains of P. syringae may be assigned to different pathovars based on host specificity among different plant species. The genomes of P. ...
    • Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis 

      Fernández Fueyo, Elena; Ruiz Dueñas, Francisco J.; Ferreira, Patricia; Floudas, Dimitrios; Lavín Trueba, José Luis Upna; Oguiza Tomé, José Antonio Upna Orcid; Pérez Garrido, Gumersinda Upna Orcid; Pisabarro de Lucas, Gerardo Upna Orcid; Ramírez Nasto, Lucía Upna Orcid; Santoyo Santos, Francisco Upna (National Academy of Sciences, 2012)   Artículo / Artikulua  OpenAccess
      Efficient lignin depolymerization is unique to the wood decay basidiomycetes, collectively referred to as white rot fungi. Phanerochaete chrysosporium simultaneously degrades lignin and cellulose, whereas the closely related ...
    • Expansion of signal transduction pathways in fungi by extensive genome duplication 

      Corrochano, Luis M.; Kuo, Alan; Marcet Houben, Marina; Oguiza Tomé, José Antonio Upna Orcid; Pisabarro de Lucas, Gerardo Upna Orcid (CellPress, 2016)   Artículo / Artikulua  OpenAccess
      Plants and fungi use light and other signals to regulate development, growth, and metabolism. The fruiting bodies of the fungus Phycomyces blakesleeanus are single cells that react to environmental cues, including light, ...
    • Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion 

      Martínez, Diego; Challacombe, Jean; Morgenstern, Ingo; Hibbett, David; Schmoll, Monika; Kubicek, Christian P.; Ferreira, Patricia; Pisabarro de Lucas, Gerardo Upna Orcid; Lavín Trueba, José Luis Upna; Oguiza Tomé, José Antonio Upna Orcid (National Academy of Sciences, 2009)   Artículo / Artikulua  OpenAccess
      Brown-rot fungi such as Postia placenta are common inhabitants of forest ecosystems and are also largely responsible for the destructive decay of wooden structures. Rapid depolymerization of cellulose is a distinguishing ...
    • Genomics and transcriptomics characterization of genes expressed during postharvest at 4 degrees C by the edible basidiomycete Pleurotus ostreatus 

      Ramírez Nasto, Lucía Upna Orcid; Oguiza Tomé, José Antonio Upna Orcid; Pérez Garrido, Gumersinda Upna Orcid; Lavín Trueba, José Luis Upna; Omarini, Alejandra; Santoyo Santos, Francisco Upna; Alfaro Sánchez, Manuel Upna Orcid; Castanera Andrés, Raúl Upna Orcid; Parenti, Alejandra Upna; Muguerza Domínguez, Elaia Upna; Pisabarro de Lucas, Gerardo Upna Orcid (Viguera Editores, S. L., 2011)   Artículo / Artikulua  OpenAccess
      Pleurotus ostreatus is an industrially cultivated basidiomycete with nutritional and environmental applications. Its genome, which was sequenced by the joint Genome Institute, has become a model for lignin degradation ...
    • Highly expressed captured genes and cross-kingdom domains present in Helitrons create novel diversity in Pleurotus ostreatus and other fungi 

      Castanera Andrés, Raúl Upna Orcid; Pérez Garrido, Gumersinda Upna Orcid; López Varas, Leticia Upna; Sancho, Rubén; Santoyo Santos, Francisco Upna; Alfaro Sánchez, Manuel Upna Orcid; Gabaldón Estevan, Juan Antonio; Pisabarro de Lucas, Gerardo Upna Orcid; Oguiza Tomé, José Antonio Upna Orcid; Ramírez Nasto, Lucía Upna Orcid (BioMed Central, 2014)   Artículo / Artikulua  OpenAccess
      Background: Helitrons are class-II eukaryotic transposons that transpose via a rolling circle mechanism. Due to their ability to capture and mobilize gene fragments, they play an important role in the evolution of their ...
    • VerSeDa: vertebrate secretome database 

      Cortázar, Ana R.; Oguiza Tomé, José Antonio Upna Orcid; Aransay, Ana M.; Lavín Trueba, José Luis Upna (Oxford University Press, 2017)   Artículo / Artikulua  OpenAccess
      Based on the current tools, de novo secretome (full set of proteins secreted by an organism) prediction is a time consuming bioinformatic task that requires a multifactorial analysis in order to obtain reliable in silico ...