Artículos de revista IMAB - IMAB aldizkari artikuluak

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Open Access
Adaptive responses to thinning: growth and sensitivity to hydric and thermal stress in four widely planted pine species
(Elsevier, 2025-10-15) Manrique-Alba, Àngela; Beguería, Santiago; Camarero, Jesús Julio; Molina, Antonio J.; Barberá, Gonzalo G.; Blanco Vaca, Juan Antonio; Cachinero Vivar, Antonio M.; Castillo, Víctor M.; Campo, Antonio D. del; Hernández, Álvaro; Imbert Rodríguez, Bosco; Jiménez, María N.; Lo, Yueh-Hsin; Lucas Borja, Manuel Esteban; Moreno, Gerardo; Navarro, Francisco B.; Navarro Cerrillo, Rafael M.; Ripoll, María Ángeles ; Sánchez-Miranda, Ángela; Ciencias; Zientziak; Institute for Multidisciplinary Research in Applied Biology - IMAB
In seasonally dry areas, thinning has been proposed as a measure of adaptive forest management to enhance growth and increase drought resistance and resilience. However, long-term growth data on different tree species and site conditions remain scarce for investigating the interactions between thinning and climatic stressors. To fill that research gap, we examined radial growth and its sensitivity to climatic conditions in 19 experimental sites of the four most planted pine species in Spain (Pinus halepensis, P. pinaster, P. nigra, and P. sylvestris). We also assessed the influence of thinning at varying intensities on growth responsiveness to climate stress. To quantify how climate impacts growth, we used seasonal temperature and water balance anomalies expressed as temperature and drought indices. Thinning consistently enhanced tree growth for 8–20 years, with the magnitude of this effect modulated by hydric conditions. While drought reduced growth, wetter conditions promoted it—particularly in mesic species such as P. sylvestris and P. nigra. Importantly, thinning increased trees’ sensitivity to climate: thinned stands—especially those of P. halepensis and P. sylvestris—became more responsive to water availability, exhibiting stronger growth increases during wet years following thinning. Temperature also played a key role, with high spring and autumn temperature anomalies enhancing growth, comparable in magnitude to favorable hydric conditions. However, in the post-thinning period, spring temperature effects were lower than prior to thinning in species from xeric sites (P. halepensis and P. pinaster). High summer temperature anomalies negatively affected growth, though more weakly and only in species from xeric sites. Thinning, however, aggravated the negative effects of summer temperatures on growth in xeric sites and induced negative effects on growth in mesic sites. These findings highlight the species-specific interactions between thinning, water availability, and temperature stress, emphasizing the need for tailored, species- and site-specific adaptive management strategies of planted forests in response to climate change.
Open Access
Secreted LysM proteins are required for niche competition and full virulence in Pseudomonas savastanoi during host plant infection
(PLOS, 2025-08-01) Domínguez-Cerván, Hilario; Barrientos-Moreno, Laura; Díaz-Martínez, Luis; Murillo Martínez, Jesús; Pérez-Dorado, Inmaculada; Ramos, Cayo; Rodríguez Moreno, Luis; Institute for Multidisciplinary Research in Applied Biology - IMAB
Phytopathogenic bacteria secrete diverse virulence factors to manipulate host defenses and establish infection. Characterization of the type III secretion system (T3SS)- and HrpL-independent secretome (T3-IS) in Pseudomonas savastanoi pv. savastanoi (Psv), the causal agent of olive knot disease, identified five secreted LysM-containing proteins (LysM1–LysM5) associated with distinct physiological processes critical for infection. Functional predictions from network analyses suggest that LysM1, LysM2, and LysM4 may participate in type IV pilus-related functions, while LysM3 and LysM5 are likely to possess peptidoglycan hydrolase domains critical for cell division. Supporting these predictions, loss of LysM1 function resulted in impaired twitching and swimming motility, highlighting a role in pilus-mediated movement and early host colonization. In contrast, mutants lacking LysM3 or LysM5 exhibited pronounced filamentation and defective bacterial division, underscoring their essential role in septation, a process crucial for both in planta fitness and tumor formation. Structural modeling and protein stability assays demonstrate that LysM3 interacts with peptidoglycan fragments such as tetra-N-acetylglucosamine and meso-diaminopimelic acid, as well as with zinc ions, through conserved LysM and M23 domains. LysM3 also displayed selective bacteriostatic activity against co-inhabiting Gram-negative bacterial competitors, such as Pantoea agglomerans and Erwinia toletana. Our findings highlight the relevance of LysM proteins in maintaining bacterial integrity, motility, and competitive fitness, which are crucial for successful host infection. This study expands the functional repertoire of LysM-containing proteins and reveals their broader impact on bacterial virulence and adaptation to the plant-associated niche.
Open Access
Fine roots of Scots pine and European beech respond differently to changes in nutrient availability in a mixed forest: results from a 4-year experiment
(Oxford University Press, 2025-02-03) Yeste Yeste, Antonio; Imbert Rodríguez, Bosco; Blanco Vaca, Juan Antonio; Ciencias; Zientziak; Institute for Multidisciplinary Research in Applied Biology - IMAB; Universidad Pública de Navarra / Nafarroako Unibertsitate Publikoa
A nutrient availability experiment was carried out for four years in a mature mixed stand of Pinus sylvestris and Fagus sylvatica in the South-western Pyrenees mountains. Initial homogeneous pine regeneration (∼58 years ago) was followed by uneven beech regeneration (∼45 years ago), leading to the current successional stage in which areas resembling pine monospecific stands are at close distances and under comparable environmental conditions to mixed pine−beech areas. Soil and fine root samples were collected beside trees under three soil nutrient availability treatments: control, litter exclusion, and nitrogen-phosphorus-potassium (NPK) fertilization. Soil samples were collected twice a year (in May and October from 2017 to 2020), and fine root samples were collected twice (in May 2018 and May 2020). Soil fertilization had a bigger impact than litter exclusion on soil chemical parameters, leading to lower pH and NH4 + values. Also, increases in soil total nitrogen, soil available phosphorus, and microbial phosphorus were found after fertilization. Scots pine showed overall lower fine root biomass, specific root length, and root tissue density than beech, presenting also very little response to treatments. On the other hand, beech showed higher biomass and specific root length, but, when soil fertility was enhanced, lower root tissue density was recorded. A negative beech effect over pine fine root biomass was observed, as pine root presence decreased when growing near beech trees in mixed areas. Beech trees not only demonstrated an elevated capability to compete for soil resources but also showed greater root plasticity than pine, enhancing beech potential to take advantage of new soil resources. Our results do not support a complementary niche partitioning but rather a competitive interaction in which European beech has an edge on colonizing the soil volume in the detriment of Scots pine.
Open Access
Biocontrol potential of Bacillus sp. against indigenous fungal phytopathogens of potato and sugarcane
(Taylor & Francis, 2025-02-02) Abid, Amina; Ahmed, Hafsa; Saeed, Zain; Dar, Abdur-Rehman; Zameer, Mahnoor; Mehnaz, Samina; Shahid, Izzah; Institute for Multidisciplinary Research in Applied Biology - IMAB; Universidad Pública de Navarra / Nafarroako Unibertsitate Publikoa
Fungal diseases pose significant threats to crops, necessitating effective control measures to mitigate their impact on agricultural productivity. In this study, fungal pathogens affecting sugarcane and potato crops in Pakistan were investigated. Morphological and molecular characterization revealed the presence of Fusarium sacchari and Ceratocystis sp. in sugarcane samples, and Epicoccum nigrum and Alternaria alternata in potato samples. Effective biocontrol of these pathogens was shown by two corn rhizobacteria, i.e. Bacillus subtilis (MUN-1) and Bacillus velezensis (MUN-15). Both strains exhibited significant inhibition of fungal growth in vitro with Bacillus subtilis demonstrating higher efficacy. Gene-specific PCR analysis confirmed the presence of surfactin and iturin genes responsible for antifungal metabolite production in these bacteria in addition to VOCs. To the best of our knowledge, this is the first report of Epicoccum nigrum infecting potato plants in Pakistan. Implementing such eco-friendly strategies can contribute to the reduction of chemical inputs in agriculture ensuring crop health and productivity.
Open Access
Evaluation of the influence of rootstock cane characteristics on grafting success rate
(International Viticulture and Enology Society (IVES), 2025-03-10) Villa Llop, Ana; Crespo Martínez, Sara; Marín, Diana; Torres Molina, Nazareth; Cookson, Sarah Jane; Loupit, Grégoire; Bonhomme, Pierre-Olivier; Prodhomme, Duyên; Gramaje, David; Bujanda, Rebeca; Eraso Zabalegui, Javier; Santesteban García, Gonzaga; Agronomía, Biotecnología y Alimentación; Agronomia, Bioteknologia eta Elikadura; Institute for Multidisciplinary Research in Applied Biology - IMAB; Universidad Pública de Navarra / Nafarroako Unibertsitate Publikoa; Gobierno de Navarra / Nafarroako Gobernua
The success of grafting in grapevine nurseries can vary significantly depending on the wood used, even if the same scion and rootstock are used, yet the underlying causes of this variation remain poorly understood. To elucidate the factors influencing grafting success, rootstock wood (Vitis berlandieri x V. rupestris cv. 110 Richter) from ten production fields - each representing different rootstock origins - in Spain and France was characterised and grafted to cv. Tempranillo, and grafting success rates were subsequently determined. Histological analysis of the rootstock canes was carried out to evaluate tissue dimensions (pith, xylem, and phloem), number of xylem vessels, and hydraulic conductivity, revealing significant differences, particularly in the size and presence of large vessels. Metabolite analysis (starch, sucrose, glucose, fructose, and proteins) and isotopic composition (δ 13C and δ 15N) further differentiated the batches. Grafting success rates were recorded after uprooting and showed positive associations with parameters of water status (δ 13C), nitrogen assimilation (δ 15N), and anatomical characteristics of the rootstock canes. These findings underscore the complex interaction of physiological, anatomical, and environmental factors influencing grafting outcomes in grapevines.
Open Access
Assessment of anticancer and antimicrobial potential of bioactive metabolites and optimization of culture conditions of pseudomonas aurantiaca PB-St2 for high yields
(The Korean Society for Microbiology and Biotechnology, 2025-02-14) Zameer, Mahnoor; Shahid, Izzah; Saleem, Rahman Shah Zaib; Baig, Deeba Noreen; Zareen, Maryam; Malik, Kauser Abdulla; Mehnaz, Samina; Institute for Multidisciplinary Research in Applied Biology - IMAB
The following study aimed to characterize the biological potential of the purified compounds of Pseudomonas aurantiaca PB-St2. Optimization of temperature and incubation time of 32oC and 72 h yielded the highest crude extract weight and optical density of bacterial culture. HPLC analysis of the crude metabolite extract (purified using gravitational column chromatography) showed three fractions named as PC1, PC2, and PC3. HPLC-purified fractions were subjected to LC-MS/MS analysis and the data was compared using reference library. Fraction PC1 was identified as mupirocin, PC2 as phenazine-1-carboxylic acid (PCA), and PC3 as the mixture of three compounds including pyoluteorin, PCA and 2-hydroxyphenazine (2-OH-phz). Fungicidal potential of the purified compounds was assessed against phytopathogens including Fusarium equiseti, Fusarium incarnatum, Alternaria alternata, and Colletotrichum falcatum. Fraction PC3 showed the highest fungicidal activity of ~89%, whereas, the least antifungal activity (~27%) was noted for mupirocin. Antibacterial activity of the purified compounds against Gram-positive pathogen Bacillus cereus, and Gram-negative pathogens Pseudomonas aeruginosa, Salmonella enterica, and Klebsiella oxytoca was also assessed. Fraction PC3 demonstrated the highest antibacterial activity against B. cereus and P. aeruginosa showing 1.8 cm, and 0.9 cm zones of inhibition, respectively. Against K. oxytoca and S. enterica, the antibacterial activity of PB-St2 crude extract was slightly higher than the fraction PC3. The fraction PC3 also demonstrated the highest IC50 against HepG-2 and SF767 cancer cell lines at 25 μg and 20 μg concentrations, respectively. The multifaceted attributes of P. aurantiaca PB-St2 make it an ideal candidate for agricultural and pharmacological applications.
Open Access
Comparative genomics of native plasmids from plant pathogenic Gammaproteobacteria
(Oxford University Press, 2025-04-01) Urriza Leoz, Miriam; Dimaria, Giulio; Oliveira, Luiz Orlando de; Catara, Vittoria; Murillo Martínez, Jesús; Agronomía, Biotecnología y Alimentación; Agronomia, Bioteknologia eta Elikadura; Institute for Multidisciplinary Research in Applied Biology - IMAB; Universidad Pública de Navarra / Nafarroako Unibertsitate Publikoa
Plasmids are key in the evolution and adaptation of plant pathogenic Gammaproteobacteria (PPG), yet their diversity and functional contributions remain underexplored. Here, comparative genomics revealed extensive variation in plasmid size, replicon types, mobility, and genetic content across PPG. Most plasmids are small (< 200 kb), except in Pantoea, exhibiting high coding densities (76% to 78%). Five ancestral replicon types were identifed across multiple orders, indicating vertical descent yet effcient horizontal transfer across taxa, although with limited genetic conservation. Virulence plasmids are widespread (56% to 68%) but differ in virulence gene content across orders: type III effector (T3E) genes are common in Pseudomonas and Xanthomonas, but rare in Enterobacterales and Xylella, aligning with their smaller effector repertoires. Plasmids frequently carry regulatory genes, highlighting their role in bacterial phenotype modulation. Distinct patterns were observed among orders: Enterobacterales plasmids often harbor thiamin biosynthesis operons and transcriptional regulators but lack post-transcriptional regulators, while most Pseudomonas and Xanthomonas plasmids are mobile, enriched in T3E genes, and exhibit high insertion sequence densities, fostering DNA mobility. Resistance to ultraviolet light is common, but not to antimicrobial compounds. These fndings highlight the dynamic role of plasmids in spreading adaptive traits, shaping virulence, and driving the evolution of plant pathogenic bacteria.
Open Access
Drought stress modifies the source-sink dynamics of nitrogen-fixing soybean plants prioritizing roots and nodules
(Wiley, 2025-05-26) Rubia Galiano, María Isabel; Larrainzar Rodríguez, Estíbaliz; Arrese-Igor Sánchez, César; Ciencias; Zientziak; Institute for Multidisciplinary Research in Applied Biology - IMAB; Universidad Pública de Navarra / Nafarroako Unibertsitate Publikoa
Soybean plants are one of the most cultivated legume crops worldwide. Their ability to establish nitrogen-fixing symbiosis with rhizobium bacteria allows the reduction of molecular nitrogen to ammonium, contributing to a reduction in the dependence on nitrogen fertilizers. However, nitrogen fixation is highly sensitive to environmental stresses, such as water deficit, and the regulatory mechanisms underlying this inhibition remain debatable. In the current study, we analyzed carbon (C) allocation dynamics in drought-stressed soybean plants following the application of [U-C-13]-sucrose to source leaves. Three sets of plants were analyzed: well-watered plants, mild drought, and severe drought-stressed plants. C-13 distribution was monitored for up to 6 h post-application. Under optimal water conditions, C-13 was mainly allocated to young (sink) leaves. During drought stress, transport trends changed, prioritizing C allocation primarily to the roots and nodules to a lesser extent. Metabolite profiling identified drought- and tissue-specific variations in the levels of the major C and N compounds.
Open Access
Drought limits tree growth more than greenness and reproduction: insights from five case studies in Spain
(KeAi Communications, 2025-08-01) Camarero, Jesús Julio; Rubio-Cuadrado, Álvaro; González de Andrés, Ester; Valeriano, Cristina; Pizarro, Manuel; Imbert Rodríguez, Bosco; Lo, Yueh-Hsin; Blanco Vaca, Juan Antonio; Ciencias; Zientziak; Institute for Multidisciplinary Research in Applied Biology - IMAB
Droughts impact forests by influencing various processes such as canopy greenness, tree growth, and reproduction, but most studies have only examined a few of these processes. More comprehensive assessments of forest responses to climate variability and water shortages are needed to improve forecasts of post-drought dynamics. Iberian forests are well-suited for evaluating these effects because they experience diverse climatic conditions and are dominated by various conifer and broadleaf species, many of which exhibit masting. We assessed how greenness, evaluated using the normalized difference vegetation index (NDVI), tree radial growth, and seed or cone production responded to drought in five tree species (three conifers: silver fir (Abies alba), Scots pine (Pinus sylvestris), and stone pine (Pinus pinea); two broadleaves: European beech (Fagus sylvatica) and holm oak (Quercus ilex) inhabiting sites with different aridity. We correlated these data with the standardized precipitation evapotranspiration index (SPEI) using the climate window analysis (climwin) package, which identifies the most relevant climate window. Drought constrained growth more than greenness and seed or cone production. Dry conditions led to high seed or cone production in species found in cool, moist sites (silver fir, beech, and Scots pine). We also found negative associations of cone production with summer SPEI in the drought-tolerant stone pine, which showed lagged growth−cone negative correlations. However, in the seasonally dry holm oak forests, severe droughts constrained both growth and acorn production, leading to a positive correlation between these variables. Drought impacts on greenness, growth, seed, and cone production depended on species phenology and site aridity. A negative correlation between growth and reproduction does not necessarily indicate trade-offs, as both may be influenced by similar climatic factors.
Open Access
Integrated biowaste management by composting at a university campus: process monitoring and quality assessment
(MDPI, 2025-03-07) Álvarez-Alonso, Cristina; Pérez-Murcia, María Dolores; Martínez-Sabater, Encarnación; Irigoyen Iriarte, Ignacio; Sánchez Arizmendiarrieta, Joseba; Plana, Ramón; López, Marga; Nogués, Isabel; Bustamante, María Ángeles; Agronomía, Biotecnología y Alimentación; Agronomia, Bioteknologia eta Elikadura; Institute for Multidisciplinary Research in Applied Biology - IMAB
The sustainable management of biowaste, mainly food and pruning waste, is currently a challenge due to the increase in its production. The CaMPuSTAJE program, which has been implemented on the campus of the Public University of Navarre (UPNA) since 2019, is an excellent example of how the institution is addressing its strategic interests in sustainable waste management. The principal aim of this program is to manage the biowastes generated by the campus canteens through a simple community composting facility, involving UPNA students and graduates. This program aims to promote experiential learning and applied research in sustainability and circular economy, managing their own waste in a circular and local way. Thus, four composting sets of the CaMPuSTAJE program were evaluated by monitoring the process and the main chemical properties of the composting samples. Also, final composts were fully characterized to ensure the process reproducibility and efficiency and the absence of any hazard in the end-products. The final composts showed a significant agronomic quality, had low content of potentially toxic elements, and were free from phytotoxicity, thus being able to be reintroduced as an organic amendment at the university campus itself.
Open Access
Baculovirus genetic diversity and population structure
(MDPI, 2025-05-07) López Ferber, Miguel; Caballero Murillo, Primitivo; Williams, Trevor; Agronomía, Biotecnología y Alimentación; Agronomia, Bioteknologia eta Elikadura; Institute for Multidisciplinary Research in Applied Biology - IMAB
Baculoviruses can naturally regulate lepidopteran populations and are used as biological insecticides. The genetic diversity of these viruses affects their survival and efficacy in pest control. For nucleopolyhedroviruses, occlusion-derived virions and the occlusion body facilitate the transmission of groups of genomes, whereas this is not the case for granuloviruses. We review the evidence for baculovirus genetic diversity in the environment, in the host insect, and in occlusion bodies and virions. Coinfection allows defective genotypes to persist through complementation and results in the pseudotyping of virus progeny that can influence their transmissibility and insecticidal properties. Genetic diversity has marked implications for the development of pest resistance to virus insecticides. We conclude that future research is warranted on the physical segregation of genomes during virus replication and on the independent action of virions during infection. We also identify opportunities for studies on the transmission of genetic diversity and host resistance to viruses.
Open Access
Broccoli (Brassica oleracea var. italica) biomass as a resource for obtaining glucosinolate extracts to control postharvest fungal diseases
(Springer, 2025-05-27) Eugui Arrizabalaga, Daniel; Fernández San Millán, Alicia; Velasco, Pablo; Veramendi Charola, Jon; Rodríguez, Víctor Manuel; Poveda Arias, Jorge; Agronomía, Biotecnología y Alimentación; Agronomia, Bioteknologia eta Elikadura; Institute for Multidisciplinary Research in Applied Biology - IMAB
Broccoli (Brassica oleracea var. italica) is a crop of great agronomic and economic importance worldwide. Because its edible parts are the inflorescences, large quantities of non-commercial biomass are produced each year in the field and in the food industry. In order to develop a circular economy around the broccoli crop, the present work develops glucosinolates (GSL) extracts with antimicrobial capacity for postharvest use in tomato, apple and table white grape against fungal diseases produced by the pathogens Botrytis cinerea, Alternaria alternata and Penicillium expansum. GSL extracts from organic crop management reported a higher content of GSLs than conventional management. These extracts are not effective in the control of A. alternata and P. expansum, possibly due to the absence of sinigrin. Furthermore, the extracts were ineffective in the control of B. cinerea on table white grapes, possibly due to the non-climacteric fruit condition and an absence in the induction of ethylene-mediated plant defenses. However, intact GSL extracts were effective in controlling B. cinerea on apple, while the addition of myrosinase enzyme caused effectiveness also on tomato and apple. Therefore, obtaining GSL extracts with biopesticidal capacity against B. cinerea in postharvest could be a circular economy strategy for broccoli agriculture and industry.
Open Access
Comparative enzymatic browning transcriptome analysis of three apple cultivars unravels a conserved regulatory network related to stress responses
(BMC, 2025-04-12) Bielsa González, Francisco Javier; Grimplet, Jérôme; Irisarri, Patricia; Miranda Jiménez, Carlos; Errea, Pilar; Pina, Ana; Agronomía, Biotecnología y Alimentación; Agronomia, Bioteknologia eta Elikadura; Institute for Multidisciplinary Research in Applied Biology - IMAB
Enzymatic browning (EB) endangers the adaptation of apple fruit cultivars to new markets, affecting organoleptic properties and producing economic losses. Polyphenol oxidases and polyphenol compounds play a key role in EB development in apple. However, the regulation of apple response to EB remains to be uncovered. In this study, three apple cultivars with different EB phenotypes ranging from low to high browning in apple pulp were used to study transcriptomic changes over time after fresh cutting (0, 30 and 60 min). This study allowed the identification of 1448 differentially expressed genes (DEGs), revealing both shared and genotype-specific responses, particularly in the affected metabolic pathways associated with EB. At 60 min (T60 vsT0), 77 DEGs were shared by all genotypes, suggesting a conserved regulatory network. This network included genes encoding for protein families such as calcium-binding proteins, heat-shock proteins, redox-responsive transcription factors, WRKY family transcription factors, zinc finger family proteins and disease resistance proteins among others. A co-expressed gene cluster, identified through Weighed Gene Co-Expression Network Analysis (WGCNA), was found to correlate with EB and included 323 genes enriched in several biological terms according to Gene Ontology analysis. Moreover, a more detailed analysis of identified WGCNA gene cluster regulatory sequences allowed the detection of cis-regulatory elements belonging to CAMTA, WRKY and WUSCHEL transcription factor families. The identification of these sequences alongside with an abundant and diverse amount of overexpressed transcription factors from various families (WRKY, ERF, GRAS, GATA, etc.) point out to a highly regulated stress-response that is strictly connected to innate plant immunity. These findings provide valuable insights into the molecular mechanism involved in apple fresh-cut browning and offer new potential targets for EB regulation.
Open Access
Alfalfa yield estimation using the combination of Sentinel-2 and meteorological data
(Elsevier, 2025-03-19) Gámez Guzmán, Angie Lorena; Segarra, Joel; Vatter, Thomas; Santesteban García, Gonzaga; Araus, José Luis; Aranjuelo Michelena, Iker; Agronomía, Biotecnología y Alimentación; Agronomia, Bioteknologia eta Elikadura; Institute for Multidisciplinary Research in Applied Biology - IMAB; Gobierno de Navarra / Nafarroako Gobernua
Context: Alfalfa (Medicago sativa L.) is one of the world's most important forages for livestock feeding. Timely yield estimates could provide information to guide management decisions to improve production. Since alfalfa crops typically undergo multiple harvests in a year and demonstrate rapid regrowth, satellite remote sensing techniques present a promising solution for alfalfa monitoring. Objective: To generate alfalfa yield estimation models at three phenological stages (early vegetative, late vegetative, and budding stages) using vegetation indices (VIs) derived from satellite Sentinel-2 images and their combination with meteorological data. Methods: We analyzed fields located in Navarre (northern Spain) over two consecutive seasons (2020 and 2021). To generate the yield estimation models, we applied a conventional multilinear regression and two machine learning algorithms (Least Absolute Shrinkage and Selection Operator - LASSO and Random Forest - RF). Results: Regardless of the statistical approach, the three phenological stages were not optimal when either VIs or meteorological data were used singularly as the predictor. However, the combination of VIs and meteorological data significantly improved the yield estimations, and in the case of LASSO model reached percentages of variance explained (R2) and normalized root mean square error (nRMSE) of R2= 0.61, nRMSE= 0.16 at the budding stage, but RF reached a R2= 0.44, nRMSE= 0.22 at the late vegetative stage, and R2= 0.36, nRMSE= 0.24 at the early vegetative stage. The most suitable variables identified were the minimum temperature, accumulated precipitation, the renormalized difference vegetation index (RDVI) and the normalized difference water index (NDWI). The RF model achieved more accurate yield estimations in early and late vegetative stages, but LASSO at bud stage. Conclusion: These models could be used for alfalfa yield estimations at the three phenological stages prior to harvest. The results provide an approach to remotely monitor alfalfa fields and can guide effective management strategies from the early development stages.
Open Access
Cubierta vegetal bajo las cepas: una alternativa al control de las malas hierbas en los viñedos
(INTIA (Tecnologías e Infraestructuras Agroalimentarias), 2023) Abad Zamora, Francisco Javier; Cibriain Sabalza, Félix; Sagüés Sarasa, Ana; Santesteban García, Gonzaga; Lezáun San Martín, Juan Antonio; Fabo Boneta, Jesús María; Virto Quecedo, Íñigo; Imbert Rodríguez, Bosco; Marín Arroyo, Remedios; Garbisu Crespo, Carlos; Ciencias; Zientziak; Agronomía, Biotecnología y Alimentación; Agronomia, Bioteknologia eta Elikadura; Institute for Multidisciplinary Research in Applied Biology - IMAB; Institute on Innovation and Sustainable Development in Food Chain - ISFOOD
En este artículo se presentan los resultados obtenidos con una cubierta vegetal de trébol sembrada bajo las cepas para competir con las malas hierbas, de manera que no sea necesario recurrir al empleo de herbicidas o laboreos intercepas.
Open Access
A novel Enterococcus-based nanofertilizer promotes seedling growth and vigor in wheat (Triticum aestivum L.)
(MDPI, 2024-10-14) Batool, Salma; Safdar, Maryam; Naseem, Saira; Sami, Abdul; Saleem, Rahman Shah Zaib; Larrainzar Rodríguez, Estíbaliz; Shahid, Izzah; Ciencias; Zientziak; Institute for Multidisciplinary Research in Applied Biology - IMAB
Excessive use of chemical fertilizers poses significant environmental and health concerns. Microbial-based biofertilizers are increasingly being promoted as safe alternatives. However, they have limitations such as gaining farmers¿ trust, the need for technical expertise, and the variable performance of microbes in the field. The development of nanobiofertilizers as agro-stimulants and agro-protective agents for climate-smart and sustainable agriculture could overcome these limitations. In the present study, auxin-producing Enterococcus sp. SR9, based on its plant growth-promoting traits, was selected for the microbe-assisted synthesis of silver nanoparticles (AgNPs). These microbial-nanoparticles SR9AgNPs were characterized using UV/Vis spectrophotometry, scanning electron microscopy, and a size analyzer. To test the efficacy of SR9AgNPs compared to treatment with the SR9 isolate alone, the germination rates of cucumber (Cucumis sativus), tomato (Solanum lycopersicum), and wheat (Triticum aestivum L.) seeds were analyzed. The data revealed that seeds simultaneously treated with SR9AgNPs and SR9 showed better germination rates than untreated control plants. In the case of vigor, wheat showed the most positive response to the nanoparticle treatment, with a higher vigor index than the other crops analyzed. The toxicity assessment of SR9AgNPs demonstrated no apparent toxicity at a concentration of 100 ppm, resulting in the highest germination and biomass gain in wheat seedlings. This work represents the first step in the characterization of microbial-assisted SR9AgNPs and encourages future studies to extend these conclusions to other relevant crops under field conditions.
Open Access
Unlocking Spanish pear genetic diversity: strategies for construction of a national core collection
(Springer Nature, 2024-11-04) Irisarri, Patricia; Urrestarazu Vidart, Jorge; Ramos-Cabrer, Ana; Pereira-Lorenzo, Santiago; Velázquez-Barrera, María Encarnación; Díaz-Hernández, María Belén; Dapena, Enrique; Urbina, Valero; Dalmases, Josep; Ríos-Mesa, Domingo; Crespo Martínez, Sara; Loidi Erviti, Maite; Santesteban García, Gonzaga; Ascasíbar-Errasti, Javier; Errea, Pilar; Miranda Jiménez, Carlos; Pina, Ana; Agronomía, Biotecnología y Alimentación; Agronomia, Bioteknologia eta Elikadura; Institute for Multidisciplinary Research in Applied Biology - IMAB
Spanish pear germplasm collections are crucial for preservation, research, and breeding efforts. However, genetic diversity and structure is unknown at national level. A coordinated national project analyzed 1251 accessions from 7 Spanish pear collections using an internationally recognized set of 14 SSRs to enhance the utilization of these collections. Key findings included the identification of 760 unique genotypes (490 diploids and 270 triploids). Notably, genotypes represented by a single accession accounted for 49% of the total, indicating high vulnerability of this material. Using a Bayesian clustering method revealed two main genetic groups, G1 containing most foreign cultivars and G2 retaining local Spanish cultivars, which were further divided into two other subgroups using a nested approach, revealing moderate but significant differentiation among them. The populations were renamed according to the origin of the reference samples assigned to each group as 'South' (G1.1), 'Western Europe-1' (G1.2), 'Western Europe-2' (G2.1) and 'No-Pyrus communis' (G2.2). The results led to the creation of a 'generalist' collection, aiming to maximize genetic diversity representativeness, starting with 68 genotypes but expanding to 111 to achieve better allele recovery. This core collection is a valuable resource for genetic studies and conservation, enhancing efforts to preserve pear biodiversity.
Open Access
Randomized clinical trial: bone bioactive liquid improves implant stability and osseointegration
(MDPI, 2024-10-01) Al Madhoun, Ashraf; Meshal, Khaled; Carrió, Neus; Ferrés‐Amat, Eduard; Ferrés-Amat, Elvira; Barajas Vélez, Miguel Ángel; Jiménez-Escobar, Ana Leticia; Al-Madhoun, Areej Said; Saber, Alaa; Abou Alsamen, Yazan; Marti, Carles; Atari, Maher; Ciencias de la Salud; Osasun Zientziak; Institute for Multidisciplinary Research in Applied Biology - IMAB; Universidad Pública de Navarra / Nafarroako Unibertsitate Publikoa
Implant stability can be compromised by factors such as inadequate bone quality and infection, leading to potential implant failure. Ensuring implant stability and longevity is crucial for patient satisfaction and quality of life. In this multicenter, randomized, double-blind clinical trial, we assessed the impact of a bone bioactive liquid (BBL) on the Galaxy TS implant's performance, stability, and osseointegration. We evaluated the impact stability, osseointegration, and pain levels using initial stability quotient (ISQ) measurements, CBCT scans, and pain assessment post-surgery. Surface analysis was performed using scanning electron microscopy (SEM) and atomic force microscopy (AFM). In vitro studies examined the BBL's effects on dental pulp pluripotent stem cells' (DPPSCs') osteogenesis and inflammation modulation in human macrophages. All implants successfully osseointegrated, as demonstrated by the results of our clinical and histological studies. The BBL-treated implants showed significantly lower pain scores by day 7 (p < 0.00001) and improved stability by day 30 (ISQ > 62.00 ± 0.59, p < 8 × 10-7). By day 60, CBCT scans revealed an increased bone area ratio in BBL-treated implants. AFM images demonstrated the BBL's softening and wettability effect on implant surfaces. Furthermore, the BBL promoted DPPSCs' osteogenesis and modulated inflammatory markers in human primary macrophages. This study presents compelling clinical and biological evidence that BBL treatment improves Galaxy TS implant stability, reduces pain, and enhances bone formation, possibly through surface tension modulation and immunomodulatory effects. This advancement holds promise for enhancing patient outcomes and implant longevity.
Open Access
Converging pathways: new approaches to integrate vocational education training and higher education
(Routledge, 2024-11-14) Farrán Blanch, Inmaculada; Núñez Aldaz, Imanol; Institute for Advanced Research in Business and Economics - INARBE; Institute for Multidisciplinary Research in Applied Biology - IMAB
The evolving professional landscape necessitates educational innovation to prepare students for emerging challenges. This paper explores the integration of Vocational Education and Training (VET) and Higher Education (HE) through double-degree programs, challenging the conventional perception of these pathways as independent. Recognising the transformative potential in synergising competencies from VET and HE, we advocate for enhancing students' employability through collaborative curriculum design and shared learning objectives. Addressing limitations in the current VET-to-HE transition, we identify four criteria for successful double programs (i) coherent competency map, (ii) unified methodology, (iii) distinctive profile, (iv) own signalling. The paper concludes with a case study of an emerging dual VET/HE program in Navarra (Spain) built on the criteria outlined above.
Open Access
New insights on Arabidopsis thaliana root adaption to ammonium nutrition by the use of a quantitative proteomic approach
(MDPI, 2019-02-14) Coleto, Inmaculada; Vega-Mas, Izargi; Glauser, Gaëtan; González Moro, María Begoña; Marino, Daniel; Ariz Arnedo, Idoia; Ciencias; Zientziak; Institute for Multidisciplinary Research in Applied Biology - IMAB
Nitrogen is an essential element for plant nutrition. Nitrate and ammonium are the two major inorganic nitrogen forms available for plant growth. Plant preference for one or the other form depends on the interplay between plant genetic background and environmental variables. Ammonium-based fertilization has been shown less environmentally harmful compared to nitrate fertilization, because of reducing, among others, nitrate leaching and nitrous oxide emissions. However, ammonium nutrition may become a stressful situation for a wide range of plant species when the ion is present at high concentrations. Although studied for long time, there is still an important lack of knowledge to explain plant tolerance or sensitivity towards ammonium nutrition. In this context, we performed a comparative proteomic study in roots of Arabidopsis thaliana plants grown under exclusive ammonium or nitrate supply. We identified and quantified 68 proteins with differential abundance between both conditions. These proteins revealed new potential important players on root response to ammonium nutrition, such as H+-consuming metabolic pathways to regulate pH homeostasis and specific secondary metabolic pathways like brassinosteroid and glucosinolate biosynthetic pathways.