Open Access
Biological and synthetic approaches to inhibiting nitrification in non-tilled Mediterranean soils
(SpringerOpen, 2021) Bozal-Leorri, Adrián; Corrochano Monsalve, Mario; Arregui Odériz, Luis Miguel; Aparicio Tejo, Pedro María; González Murua, Carmen; Agronomía, Biotecnología y Alimentación; Agronomia, Bioteknologia eta Elikadura; Ciencias; Zientziak
Background: The increasing demand for food production has led to a tenfold increase in nitrogen (N) fertilizer use since the Green Revolution. Nowadays, agricultural soils have been turned into high-nitrifying environments that increase N pollution. To decrease N losses, synthetic nitrification inhibitors (SNIs) such as 3,4-dimethylpyrazole phosphate (DMPP) have been developed. However, SNIs are not widely adopted by farmers due to their biologically limited stability and soil mobility. On the other hand, allelopathic substances from root exudates from crops such as sorghum are known for their activity as biological nitrification inhibitors (BNIs). These substances are released directly into the rhizosphere. Nevertheless, BNI exudation could be modified or even suppressed if crop development is affected. In this work, we compare the performance of biological (sorghum crop) and synthetic (DMPP) nitrification inhibitors in field conditions. Results: Sorghum crop BNIs and DMPP prevented an increase in the abundance of ammonia-oxidizing bacteria (AOB) without affecting the total bacterial abundance. Both nitrification inhibitors maintained similar soil NH4+ content, but at 30 days post-fertilization (DPF), the sorghum BNIs resulted in higher soil NO3− content than DMPP. Even so, these inhibitors managed to reduce 64% and 96%, respectively, of the NO3−-N/NH4+-N ratio compared to the control treatment. Similar to soil mineral N, there were no differences in leaf δ15N values between the two nitrification inhibitors, yet at 30 DPF, δ15N values from sorghum BNI were more positive than those of DMPP. N2O emissions from DMPP-treated soil were low throughout the experiment. Nevertheless, while sorghum BNIs also maintained low N2O emissions, they were associated with a substantial N2O emission peak at 3 DPF that lasted until 7 DPF. Conclusions: Our results indicate that while sorghum root exudates can reduce nitrification in field soil, even at the same efficiency as DMPP for a certain amount of time, they are not able to prevent the N pollution derived from N fertilization as DMPP does during the entire experiment.
Open Access
Evaluation of nitrate soil probes for a more sustainable agriculture
(MDPI, 2022) Bellosta Diest, Amelia; Campo-Bescós, Miguel; Zapatería Miranda, Jesús; Casalí Sarasíbar, Javier; Arregui Odériz, Luis Miguel; Agronomía, Biotecnología y Alimentación; Agronomia, Bioteknologia eta Elikadura; Ingeniería; Ingeniaritza; Institute on Innovation and Sustainable Development in Food Chain - ISFOOD; Gobierno de Navarra / Nafarroako Gobernua
Synthetic nitrogen (N) fertilizers and their increased production and utilization have played a great role in increasing crop yield and in meeting the food demands resulting from population growth. Nitrate (NO3−) is the common form of nitrogen absorbed by plants. It has high water solubility and low retention by soil particles, making it prone to leaching and mobilization by surface water, which can seriously contaminate biological environments and affect human health. Few methods exist to measure nitrate in the soil. The development of ion selective sensors provides knowledge about the dynamics of nitrate in the soil in real time, which can be very useful for nitrate management. The objective of this study is to analyze the performance of three commercial probes (Nutrisens, RIKA and JXCT) under the same conditions. The performance was analyzed with respect to electrical conductivity (EC) (0–50 mS/cm) and nitrate concentration in aqueous solution and in sand (0–180 ppm NO3−) at 35% volumetric soil moisture. Differences were shown among probes when studying their response to variations of the EC and, notably, only the Nutrisens probe provided coherent accurate measurements. In the evaluation of nitrate concentration in liquid solution, all probes proved to be highly sensitive. Finally, in the evaluation of all probes’ response to modifications in nitrate concentration in sand, the sensitivity decreased for all probes, with the Nutrisens probe the most sensitive and the other two probes almost insensitive.
Open Access
Plant growth-promoting traits of yeasts isolated from Spanish vineyards: benefits for seedling development
(Elsevier, 2020) Fernández San Millán, Alicia; Farrán Blanch, Inmaculada; Larraya Reta, Luis María; Ancín Rípodas, María; Arregui Odériz, Luis Miguel; Veramendi Charola, Jon; Institute for Multidisciplinary Research in Applied Biology - IMAB; Gobierno de Navarra / Nafarroako Gobernua
It is known that some microorganisms can enhance plant development. However, the use of yeasts as growth-promoting agents has been poorly investigated. The aim of this study was the characterisation of a collection of 69 yeast strains isolated from Spanish vineyards. Phytobeneficial attributes such as solubilisation of nutrients, synthesis of active biomolecules and cell wall-degrading enzyme production were analysed. Strains that revealed multiple growth-promoting characteristics were identified. The in vitro co-culture of Nicotiana benthamiana with yeast isolates showed enhancement of plant growth in 10 strains (up to 5-fold higher shoot dry weight in the case of Hyphopichiapseudoburtonii Hp-54), indicating a beneficial direct yeast-plant interaction. In addition, 18 out of the 69 strains increased dry weight and the number of roots per seedling when tobacco seeds were inoculated. Two of these, Pichia dianae Pd-2 and Meyerozymaguilliermondii Mg-11, also increased the chlorophyll content. The results in tobacco were mostly reproduced in lettuce with these two strains, which demonstrates that the effect of the yeast-plant interaction is not species-specific. In addition, the yeast collection was evaluated in maize seedlings grown in soil in a phytotron. Three isolates (Debaryomyces hansenii Dh-67, Lachancea thermotolerans Lt-69 and Saccharomyces cerevisiae Sc-6) promoted seedling development (increases of 10 % in dry weight and chlorophyll content). In conclusion, our data confirm that several yeast strains can promote plant growth and could be considered for the development of biological fertiliser treatments.
Open Access
Evaluation of a crop rotation with biological inhibition potential to avoid N2O emissions in comparison with synthetic nitrification inhibition
(Elsevier, 2023) Bozal-Leorri, Adrián; Corrochano Monsalve, Mario; Arregui Odériz, Luis Miguel; Aparicio Tejo, Pedro María; González Murua, Carmen; Institute on Innovation and Sustainable Development in Food Chain - ISFOOD; Institute for Multidisciplinary Research in Applied Biology - IMAB
Agriculture has increased the release of reactive nitrogen to the environment due to crops’ low nitrogen-use efficiency (NUE) after the application of nitrogen-fertilisers. Practices like the use of stabilized-fertilisers with nitrification inhibitors such as DMPP (3,4- dimethylpyrazole phosphate) have been adopted to reduce nitrogen losses. Otherwise, cover crops can be used in crop-rotation-strategies to reduce soil nitrogen pollution and benefit the following culture. Sorghum (Sorghum bicolor) could be a good candidate as it is drought tolerant and its culture can reduce nitrogen losses derived from nitrification because it exudates biological nitrification inhibitors (BNIs). This work aimed to evaluate the effect of fallow-wheat and sorghum cover crop-wheat rotations on N2O emissions and the grain yield of winter wheat crop. In addition, the suitability of DMPP addition was also analyzed. The use of sorghum as a cover crop might not be a suitable option to mitigate nitrogen losses in the subsequent crop. Although sorghum–wheat rotation was able to reduce 22% the abundance of amoA, it presented an increment of 77% in cumulative N2O emissions compared to fallow–wheat rotation, which was probably related to a greater abundance of heterotrophic-denitrification genes. On the other hand,the application of DMPP avoided the growth of ammonia-oxidizing bacteria and maintained the N2O emissions at the levels of unfertilized-soils in both rotations. As a conclusion, the use of DMPP would be recommendable regardless of the rotation since it maintains NH4 + in the soil for longer and mitigates the impact of the crop residues on nitrogen soil dynamics
Open Access
New methodology for wheat attenuation correction at C-Band VV-polarized backscatter time series
(IEEE, 2022) Arias Cuenca, María; Campo-Bescós, Miguel; Arregui Odériz, Luis Miguel; González de Audícana Amenábar, María; Álvarez-Mozos, Jesús; Agronomia, Bioteknologia eta Elikadura; Ingeniaritza; Institute on Innovation and Sustainable Development in Food Chain - ISFOOD; Agronomía, Biotecnología y Alimentación; Ingeniería
Wheat is one of the most important crops worldwide, and thus the use of remote sensing data for wheat monitoring has attracted much interest. Synthetic Aperture Radar (SAR) observations show that, at C-band and VV polarization, wheat canopy attenuates the surface scattering component from the underlying soil during a significant part of its growth cycle. This behavior needs to be accounted for or corrected before soil moisture retrieval is attempted. The objective of this paper is to develop a new method for wheat attenuation correction (WATCOR) applicable to Sentinel-1 VV time series and based solely on the information contained in the time series itself. The hypothesis of WATCOR is that without attenuation, VV backscatter would follow a stable long-term trend during the agricultural season, with short-term variations caused by soil moisture dynamics. The method relies on time series smoothing and changing point detection, and its implementation follows a series of simple steps. The performance of the method was compared by evaluating the correlation between backscatter and soil moisture content in six wheat fields with available soil moisture data. The Water Cloud Model (WCM) was also applied as a benchmark. The results showed that WATCOR successfully removed the attenuation in the time series, and achieved the highest correlation with soil moisture, improving markedly the correlation of the original backscatter. WATCOR can be easily implemented, as it does not require parameterization or any external data, only an approximate indication of the period where attenuation is likely to occur.
Open Access
Soil moisture modulates biological nitrification inhibitors release in sorghum plants
(Springer, 2023) Bozal-Leorri, Adrián; Arregui Odériz, Luis Miguel; Torralbo, Fernando; González Moro, María Begoña; González Murua, Carmen; Aparicio Tejo, Pedro María; Institute on Innovation and Sustainable Development in Food Chain - ISFOOD; Institute for Multidisciplinary Research in Applied Biology - IMAB
Background and aims: Sorghum (Sorghum bicolor) is able to exude allelochemicals with biological nitrifcation inhibition (BNI) capacity. Therefore, sorghum might be an option as cover crop since its BNI ability may reduce N pollution in the following crop due to a decreased nitrifcation. However, BNI exudation is related to the physiological state and development of the plant, so abiotic stresses such as drought might modify the rate of BNI exudation. Hence, the objective was to determine the efect of drought stress on sorghum plants’ BNI release. Methods: The residual efects of sorghum crops over ammonia-oxidizing bacteria (AOB) were monitored in a 3-year feld experiment. In a controlled-conditions experiment, sorghum plants were grown under Watered (60% WFPS) or Moderate drought (30% WFPS) conditions, and fertilized with ammonium sulphate (A), ammonium sulphate+DMPP (A+D), or potassium nitrate (KNO3 −). Soil mineral N was determined, and AOB populations were quantifed. Additionally, plant biomass, isotopic discrimination of N and C, and photosynthetic parameters were measured in sorghum plants. Results: In the driest year, sorghum was able to reduce the AOB relative abundance by 50% at feld conditions. In the plant-soil microcosm, drought stress reduced leaf photosynthetic parameters, which had an impact on plant biomass. Under these conditions, sorghum plants exposed to Moderate drought reduced the AOB abundance of A treatment by 25% compared to Watered treatment. Conclusion: The release of BNI by sorghum under limited water conditions might ensure high soil NH4 +-N pool for crop uptake due to a reduction of nitrifying microorganisms.
Open Access
Evaluation of soil moisture estimation techniques based on Sentinel-1 observations over wheat fields
(Elsevier, 2023) Arias Cuenca, María; Notarnicola, Claudia; Campo-Bescós, Miguel; Arregui Odériz, Luis Miguel; Álvarez-Mozos, Jesús; Agronomía, Biotecnología y Alimentación; Agronomia, Bioteknologia eta Elikadura; Ingeniería; Ingeniaritza; Institute on Innovation and Sustainable Development in Food Chain - ISFOOD; Universidad Pública de Navarra / Nafarroako Unibertsitate Publikoa
Soil moisture (SM) is a key variable in agriculture and its monitoring is essential. SM determines the amount of water available to plants, having a direct impact on the development of crops, on the forecasting of crop yields and on the surveillance of food security. Microwave remote sensing offers a great potential for estimating SM because it is sensitive to the dielectric characteristics of observed surface that depend on surface soil moisture. The objective of this study is the evaluation of three change detection methodologies for SM estimation over wheat at the agricultural field scale based on Sentinel-1 time series: Short Term Change Detection (STCD), TU Wien Change Detection (TUWCD) and Multitemporal Bayesian Change Detection (MTBCD). Different methodological alternatives were proposed for the implementation of these techniques at the agricultural field scale. Soil moisture measurements from eight experimental wheat fields were used for validating the methodologies. All available Sentinel-1 acquisitions were processed and the eventual benefit of correcting for vegetation effects in backscatter time series was evaluated. The results were rather variable, with some experimental fields achieving successful performance metrics (ubRMSE ~ 0.05 m3 /m3 ) and some others rather poor ones (ubRMSE > 0.12 m3 / m3 ). Evaluating median performance metrics, it was observed that both TUWCD and MTBCD methods obtained better results when run with vegetation corrected backscatter time series (ubRMSE ~0.07 m3 /m3 ) whereas STCD produced similar results with and without vegetation correction (ubRMSE ~0.08 m3 /m3 ). The soil moisture content had an influence on the accuracy of the different methodologies, with higher errors observed for drier conditions and rain-fed fields, in comparison to wetter conditions and irrigated fields. Taking into account the spatial scale of this case study, results were considered promising for the future application of these techniques in irrigation management.
Open Access
Effects of innovative long-term soil and crop management on topsoil properties of a mediterranean soil based on detailed water retention curves
(European Geosciences Union, 2022) Aldaz Lusarreta, Alaitz; Giménez Díaz, Rafael; Campo-Bescós, Miguel; Arregui Odériz, Luis Miguel; Virto Quecedo, Íñigo; Agronomía, Biotecnología y Alimentación; Agronomia, Bioteknologia eta Elikadura; Ciencias; Zientziak; Ingeniería; Ingeniaritza; Institute on Innovation and Sustainable Development in Food Chain - ISFOOD; Gobierno de Navarra / Nafarroako Gobernua
The effectiveness of conservation agriculture (CA) and other soil management strategies implying a reduction of tillage has been shown to be site-dependent (crop, clime and soil), and thus any new soil and crop management should be rigorously evaluated before its implementation. Moreover, farmers are normally reluctant to abandon conventional practices if this means putting their production at risk. This study evaluates an innovative soil and crop management (including no-tillage, cover crops and organic amendments) as an alternative to conventional management for rainfed cereal cropping in a calcareous soil in a semi-arid Mediterranean climatic zone of Navarra (Spain), based on the analysis of soil water retention curves (SWRCs) and soil structure. The study was carried out in a small agricultural area in the municipality of Garínoain (Navarre, Spain) devoted to rainfed cereal cropping. No other agricultural area in the whole region of Navarre exists where soil and crop management as proposed herein is practiced. Climate is temperate Mediterranean, and the dominant soil is Fluventic Haploxerept. Within the study area there is a subarea devoted to the proposed soil and crop management (OPM treatment), while there is another subarea where the soil and crop management is conventional in the zone (CM treatment). OPM includes no-tillage (18 years continuous) after conventional tillage, crop rotation, use of cover crops and occasional application of organic amendments. CM involves continuous conventional tillage (chisel plow), mineral fertilization, no cover crops and a lower diversity of crops in the rotation. Undisturbed soil samples from the topsoil and disturbed samples from the tilled layer were collected for both systems. The undisturbed samples were used to obtain the detailed SWRCs in the low suction range using a HYPROP©device. From the SWRCs, different approaches found in the literature to evaluate soil physical quality were calculated. The pore-size distribution was also estimated from the SWRCs. Disturbed samples were used in the laboratory to assess soil structure by means of an aggregate-size fractionation and to perform complementary analysis from which other indicators related to soil functioning and agricultural sustainability were obtained. The approaches evaluated did not show clear differences between treatments. However, the differences in soil quality between the two forms of management were better observed in the pore size distributions and by the analysis of the size distribution and stability of soil aggregates. There was an overabundance of macropores under CM, while the amount of mesopores (available water) and micropores were similar in both treatments. Likewise, more stable macroaggregates were observed in OPM than in CM, as well as more organic C storage, greater microbial activity, and biomass. The proposed management system is providing good results regarding soil physical quality and contributing also to the enhancement of biodiversity, as well as to the improvement in water-use efficiency. Finally, our findings suggest that the adoption of the proposed practice would not result in a loss in yields compared to conventional management.