Open Access
Optimización de dispositivos en fibra óptica basados en resonancias de modos con pérdidas para aplicaciones en biosensores
(2018) Zubiate Orzanco, Pablo; Ruiz Zamarreño, Carlos; Arregui San Martín, Francisco Javier; Ingeniería Eléctrica, Electrónica y de Comunicación; Ingeniaritza Elektrikoa, Elektronikoaren eta Telekomunikazio Ingeniaritzaren; Universidad Pública de Navarra / Nafarroako Unibertsitate Publikoa; Gobierno de Navarra / Nafarroako Gobernua PC023-024 BIOPTSENS
El desarrollo de los sensores en fibra óptica combinado con el avance de la nanotecnología ha proporcionado una excelente oportunidad para el desarrollo de nuevas plataformas sensoras ópticas portátiles, ligeras y de alto rendimiento capaces de realizar detección in situ y en tiempo real. Esta tesis quiere contribuir al avance de la tecnología de los sensores ópticos basados en resonancias de modos con pérdidas (LMRs, por sus siglas en inglés), mejorando el rendimiento de dichos dispositivos, para luego detectar biomarcadores específicos que permitan un diagnóstico selectivo y precoz de diferentes enfermedades. En este trabajo, los LMRs generados en una fibra de tipo D permiten medir los cambios en el índice de refracción externo con una sensibilidad muy alta. En consecuencia, es posible detectar concentraciones muy bajas de analito en muestras de suero. Los resultados mostrados en esta tesis revelan el potencial de los sensores basados en LMRs para desempeñar un papel fundamental en el ámbito biomédico.
Open Access
Optical sensors based on lossy-mode resonances
(Elsevier Science, 2017) Matías Maestro, Ignacio; Ascorbe Muruzabal, Joaquín; Acha Morrás, Nerea de; López Torres, Diego; Zubiate Orzanco, Pablo; Sánchez Zábal, Pedro; Urrutia Azcona, Aitor; Socorro Leránoz, Abián Bentor; Rivero Fuente, Pedro J.; Hernáez Sáenz de Zaitigui, Miguel; Elosúa Aguado, César; Goicoechea Fernández, Javier; Bariáin Aisa, Cándido; Corres Sanz, Jesús María; Ruiz Zamarreño, Carlos; Arregui San Martín, Francisco Javier; Del Villar, Ignacio; Ingeniería Eléctrica y Electrónica; Ingeniaritza Elektrikoa eta Elektronikoa; Institute of Smart Cities - ISC
Open Access
Ultra-low detection limit lossy mode resonance-based fibre-optic biosensor
(Optica Publishing Group, 2018) Chiavaioli, Francesco; Zubiate Orzanco, Pablo; Del Villar, Ignacio; Ruiz Zamarreño, Carlos; Giannetti, Ambra; Tombelli, Sara; Trono, Cosimo; Matías Maestro, Ignacio; Arregui San Martín, Francisco Javier; Baldini, Francesco; Ingeniería Eléctrica, Electrónica y de Comunicación; Ingeniaritza Elektrikoa, Elektronikoa eta Telekomunikazio Ingeniaritza; Institute of Smart Cities - ISC
We report on ultra-low detection limit lossy mode resonance-based fibre-optic biosensor coated with nm-thick tin dioxide film, which allows measuring fibre-surrounding medium changes with very high sensitivity for label-free and real-time biomolecular interaction analysis
Open Access
D-shape optical fiber refractometer based on TM and TE lossy mode resonances
(SPIE, 2014) Zubiate Orzanco, Pablo; Ruiz Zamarreño, Carlos; Del Villar, Ignacio; Matías Maestro, Ignacio; Arregui San Martín, Francisco Javier; Ingeniería Eléctrica, Electrónica y de Comunicación; Ingeniaritza Elektrikoa, Elektronikoa eta Telekomunikazio Ingeniaritza
The fabrication and characterization of an optical fiber refractometer based on Lossy Mode Resonances (LMR) is presented. TiO2/ poly (sodium 4-styrenesulfonate) coatings deposited on side-polished D-shaped optical fibers are used as LMR supporting coatings. LMRs are sensitive to the external medium refractive index and D-shaped optical fibers enable the observation of TE and TM LMR polarizations. These refractometers based on TE and TM LMR showed an average sensitivity of 2737 nm/RIU and 2893 nm/RIU respectively for a surrounding medium refractive index (SMRI) range from 1.35 to 1.41.
Open Access
Short single strand DNA detection by means of Lossy Mode Resonance based fiber-optic sensor
(IEEE, 2019-01-14) Zubiate Orzanco, Pablo; Ciáurriz Gortari, Paula; Tellechea Malda, Edurne; Santano Rivero, Desiree; Del Villar, Ignacio; Urrutia Azcona, Aitor; Arregui San Martín, Francisco Javier; Matías Maestro, Ignacio; Ruiz Zamarreño, Carlos; Ingeniería Eléctrica, Electrónica y de Comunicación; Ingeniaritza Elektrikoa, Elektronikoa eta Telekomunikazio Ingeniaritza; Institute of Smart Cities - ISC; Universidad Pública de Navarra / Nafarroako Unibertsitate Publikoa, PJUPNA26
Development of DNA and RNA biosensors and the associated diagnostic tests have gained growing interest in recent years. In particular, short RNA chains (around 25 oligonucleotides), known as micro RNAs, can be associated different stroke and neurodegenerative diseases. Here, we present the utilization of highly sensitive fiber optic sensor based on Lossy Mode Resonance (LMR) for the detection of single strand complementary DNA (ssDNA) associated to Huntington disease (Hsa-miR-34b).
Open Access
High sensitive refractometers based on lossy mode resonances (LMRs) supported by ITO coated D-shaped optical fibers
(Optical Society of America, 2015) Zubiate Orzanco, Pablo; Ruiz Zamarreño, Carlos; Del Villar, Ignacio; Matías Maestro, Ignacio; Arregui San Martín, Francisco Javier; Ingeniería Eléctrica y Electrónica; Ingeniaritza Elektrikoa eta Elektronikoa
Tin doped indium oxide (ITO) coatings fabricated onto D-shaped optical fibers are presented as the supporting medium for Lossy Mode Resonances (LMRs) generation. The characteristic geometry of ITO-coated D-shaped optical fibers enables to observe experimentally LMRs obtained with both TM and TE polarized light (LMRTM and LMRTE). This permits to obtain a maximum transmission decay of 36 dB with a LMR spectral width of 6.9 nm, improving that obtained in previous works, where the LMRs were a combination of an LMRTM and an LMRTE. Surrounding medium refractive index (SMRI) sensitivity characterization of LMRTM has been performed obtaining a maximum sensitivity of 8742 nm/RIU in the range 1.365-1.38 refractive index units (RIU) which overcomes that of surface plasmon resonance-based optical fiber devices presented in recent works.
Open Access
High sensitive and selective C-reactive protein detection by means of lossy mode resonance based optical fiber devices
(Elsevier, 2017) Zubiate Orzanco, Pablo; Ruiz Zamarreño, Carlos; Sánchez Zábal, Pedro; Matías Maestro, Ignacio; Arregui San Martín, Francisco Javier; Institute of Smart Cities - ISC; Ingeniería Eléctrica y Electrónica; Ingeniaritza Elektrikoa eta Elektronikoa; Universidad Pública de Navarra / Nafarroako Unibertsitate Publikoa
This work presents the development of high sensitive, selective, fast and reusable C-reactive protein (CRP) aptasensors. This novel approach takes advantage of the utilization of high sensitive refractometers based on Lossy Mode Resonances generated by thin indium tin oxide (ITO) films fabricated onto the planar region of D-shaped optical fibers. CRP selectivity is obtained by means of the adhesion of a CRP specific aptamer chain onto the ITO film using the Layer-by-Layer (LbL) nano-assembly fabrication process. The sensing mechanism relies on resonance wavelength shifts originated by refractive index variations of the aptamer chain in presence of the target molecule. Fabricated devices show high selectivity to CRP when compared with other target molecules, such as urea or creatinine, while maintaining a low detection limit (0.0625 mg/L) and fast response time (61 s). Additionally, these sensors show a repetitive response for several days and are reusable after a cleaning process in ultrapure water.
Open Access
Gas detection using LMR-based optical fiber sensors
(MDPI, 2018) Dreyer, Uilian José; Ozcariz Celaya, Aritz; Ascorbe Muruzabal, Joaquín; Zubiate Orzanco, Pablo; Vitoria Pascual, Ignacio; Martelli, Cicero; Cardozo da Silva, Jean Carlos; Ruiz Zamarreño, Carlos; Ingeniaritza Elektrikoa, Elektronikoaren eta Telekomunikazio Ingeniaritzaren; Institute of Smart Cities - ISC; Ingeniería Eléctrica, Electrónica y de Comunicación
This work presents a first approach to the utilization of Lossy Mode Resonance (LMR) based optical fiber sensors for gas detection. The optical sensor is based on a SnO2 thin-film fabricated onto the core of cladding removed multimode fibers (MMF). The time response of the device to four different gases (NH3, NO, CO2 and O2) was monitored obtaining the best sensitivity for NO whereas the response to NH3 revealed the best repeatability.
Open Access
Femtomolar detection by nanocoated fiber label-free biosensors
(American Chemical Society, 2018) Chiavaioli, Francesco; Zubiate Orzanco, Pablo; Del Villar, Ignacio; Ruiz Zamarreño, Carlos; Giannetti, Ambra; Tombelli, Sara; Trono, Cosimo; Arregui San Martín, Francisco Javier; Matías Maestro, Ignacio; Baldini, Francesco; Institute of Smart Cities - ISC; Ingeniería Eléctrica y Electrónica; Ingeniaritza Elektrikoa eta Elektronikoa; Gobierno de Navarra / Nafarroako Gobernua
The advent of optical fibre-based biosensors combined with that of nanotechnologies has provided an oppor-tunity for developing in situ, portable, lightweight, versatile and high-performance optical sensing platforms. We report on the generation of lossy mode resonances by the deposition of nm-thick metal oxide films on optical fibres, which makes it possible to measure precisely and accurately the changes in optical properties of the fibre-surrounding medium with very high sensitivity compared to other technology platforms, such as long period gratings or surface plasmon resonances, the gold standard in label-free and real-time biomolecular interaction analysis. This property, combined with the application of specialty structures such as D-shaped fibres, permits enhancing the light-matter interaction. SEM and TEM imaging together with X-EDS tool have been utilised to characterise the two films used, i.e. indium tin oxide and tin dioxide. More-over, the experimental transmission spectra obtained after the deposition of the nanocoatings have been numerically cor-roborated by means of wave propagation methods. With the use of a conventional wavelength interrogation system and ad-hoc developed microfluidics, the shift of the lossy mode resonance can be reliably recorded in response to very low analyte concentrations. Repeated experiments confirm a big leap in performance thanks to the capability to detect femtomolar concentrations in human serum, improving the detection limit by three orders of magnitude when compared with other fibre-based configurations. The biosensor has been regenerated several times by injecting sodium dodecyl sul-phate, which proves the capability of sensor to be reused.
Open Access
Fiber-based early diagnosis of venous thromboembolic disease by label-free D-dimer detection
(Elsevier, 2019) Zubiate Orzanco, Pablo; Urrutia Azcona, Aitor; Ruiz Zamarreño, Carlos; Egea Urra, Josune; Fernández Irigoyen, Joaquín; Giannetti, Ambra; Baldini, Francesco; Díaz Lucas, Silvia; Matías Maestro, Ignacio; Arregui San Martín, Francisco Javier; Santamaría Martínez, Enrique; Chiavaioli, Francesco; Del Villar, Ignacio; Ingeniaritza Elektrikoa, Elektronikoaren eta Telekomunikazio Ingeniaritzaren; Institute of Smart Cities - ISC; Ingeniería Eléctrica, Electrónica y de Comunicación; Gobierno de Navarra / Nafarroako Gobernua
D-dimer is a useful diagnostic biomarker for deep vein thrombosis or pulmonary embolism, collectively referred to as venous thromboembolism (VTE). The ability to detect in real-time the amount of D-dimer with a fast and reliable method is a key step to anticipate the appearance of these diseases. Here, the results of a highly specific and sensitive biosensor for the detection of D-dimer based on lossy mode resonance in fiber optics are presented. The unique features of specialty fibers in light management integrated with microfluidics allow detecting D-dimer in human serum with a detection limit of 100 ng/mL, a value 5-fold below the clinical cutoff value. Comparison of the results achieved with mass-spectrometry-based proteomics, which allows for the identification of beta- and gamma-chains of fibrinogen, demonstrates the ability of our platform to specifically (>90%) recognize D-dimer. Therefore, this technology potentially represents a paradigm shift in the development of a simple, high-specificity and label-free biosensing platform, which can be applied to speed up diagnostic healthcare processes of venous thromboembolism toward an early diagnostic and personalized treatment system.