Artículos de revista DABA - ABES Aldizkari artikuluak
Permanent URI for this collection
Browse
Recent Submissions
Publication Open Access Restorative pyric herbivory practices in shrub-encroached grasslands enhance nutrient resource availability and spatial heterogeneity(Elsevier, 2024-05-31) Canals Tresserras, Rosa María; Múgica Azpilicueta, Leire; Durán Lázaro, María; San Emeterio Garciandía, Leticia; Agronomía, Biotecnología y Alimentación; Agronomia, Bioteknologia eta Elikadura; Institute on Innovation and Sustainable Development in Food Chain - ISFOODPyric herbivory (PH), the combination of prescribed burnings and targeted herbivory, is a promising tool for landscape restoration that emulates historical disturbance regimes. Nitrogen (N) and phosphorus (P) are crucial nutrients for plant growth and although several studies have analysed the single effects of fire or grazers in their availability, the combined effect of both disturbances in the soil nutrient budgets have been rarely considered. This research was planned to analyse the 2-year impact of PH restoration practices on the availability of N and P in two Ulex gallii-encroached grasslands in the Pyrenees. We monitored available forms of N and P for two years using periodic replacements of ion exchange resins to test the hypothesis that mid-term effect of targeted grazing was more relevant than short-term effect of burning. Additionally, we investigated the role of temperature and precipitation on nutrients accumulation and compared its significance to management factors. Burning transformed vegetation and litter into a spatially heterogeneous layer of ash and charred material, which resulted in a variable availability of N and P at the rhizosphere level. After two periods of PH, nutrient availability was higher in soils from grazed plots compared to ungrazed, and the impacts of early burns were scarcely discernible. Nitrate was found to be the most rainfall-dependent nutrient, and grazing also affected its spatial distribution. Our results suggest that the heterogeneous nutrient enrichment enhanced by PH is important for promoting the establishment of a diverse pool of plant species, including both N2-fixing and non-fixing species. In these rainy areas, the use of burnings alone, without grazing, may perpetuate the dynamics of N2-fixing shrub encroachment.Publication Open Access Pyric herbivory decreases soil denitrification despite increased nitrate availability in a temperate grassland(Elsevier, 2024-07-04) Múgica Azpilicueta, Leire; Le Roux, Xavier; San Emeterio Garciandía, Leticia; Cantarel, Amélie; Durán Lázaro, María; Gervaix, Jonathan; Creuzé des Châtelliers, Charline; Canals Tresserras, Rosa María; Agronomía, Biotecnología y Alimentación; Agronomia, Bioteknologia eta Elikadura; Institute on Innovation and Sustainable Development in Food Chain - ISFOODPyric herbivory, the combination of controlled burning and targeted grazing, is an effective strategy for restoring abandoned, shrub-encroached rangelands to open ecosystems. This practice may impact soil nitrogen pools by altering soil nitrification and denitrification rates, and may lead to an increase of nitrogen losses through nitrate leaching and N-gas emissions. This research, located in the south-western Pyrenees, investigated the effects of pyric herbivory on soil nitrification and denitrification potentials and mineral nitrogen content in a gorse-encroached temperate rangeland six months after the burning was implemented. The study included three treatments: high-severity burning plus grazing, low-severity burning plus grazing, and unburned and ungrazed areas (control). We measured soil nitrification and denitrification potentials (net and gross), the limitation of denitrifiers by nitrogen or organic carbon, and the abundance of nitrite- and nitrous oxide-reducing bacteria. Additional soil and vegetation data complemented these measurements. Results showed that pyric herbivory did not significantly affect nitrification potential, which was low and highly variable. However, it decreased gross denitrification potential and nitrous oxide reduction to dinitrogen in high-severely burned areas compared to the control. Denitrification rates directly correlated with microbial biomass nitrogen, soil organic carbon, soil water content and abundance of nirS-harbouring bacteria. Contrary to the expected, soil nitrate availability did not directly influence denitrification despite being highest in burned areas. Overall, the study suggests that pyric herbivory does not significantly affect mid-term nitrification rates in temperate open ecosystems, but may decrease denitrification rates in intensely burned areas. These findings highlight the importance of assessing the potential impacts of land management practices, such as pyric herbivory, on soil nutrient cycling and ecosystem functioning.Publication Open Access The pineapple as a means to develop scientific competence in the spanish high school diploma of research(Springer, 2024) Pozuelo, Jorge; Cascarosa, Esther; Alonso, Esther; Barba González-Albo, Carmen; Agronomía, Biotecnología y Alimentación; Agronomia, Bioteknologia eta Elikadura; Institute on Innovation and Sustainable Development in Food Chain - ISFOODEvery three years, the Organisation for European Cooperation and Development evaluates the scientific competence of European students. Recent results have demonstrated that scientific competence in Spain is somewhat underdeveloped, which underscores the need to apply educational methodologies that favour the development of said competence. This paper analysed the extent to which the implementation of the Spanish high school diploma of research favoured the development of the Scientific Competence of students. The students had to develop a research project, co-tutored by a secondary education teacher and a University teacher/researcher. Both professionals offered the guidance necessary to develop a project that concerned the resolution of a problem of interest. Audio and video data were collected during the 18 months of the high school programme. These data were transcribed and analysed using a rubric designed ad hoc. This assessment instrument is a relevant point of this work as long as it can be used as evaluating tool in the Scientific Competence assessment of future studies. The results revealed that the students had to make use of their knowledge of the research topic, strengthen this knowledge, substantiate the research using the scientific literature, design and develop the experimental methodology, collect, analyse and present data, and, finally, disclose these data. The results indicated high levels of development in the three sub-competences that were explored, which concluded in a high development of scientific competence.Publication Open Access Evaluación del contenido de acrilamida en chips de papa (Solanum tuberosum L.) elaborados por fritura convencional y al vacío(Asociación Latinoamericana de la Papa, 2020) Villacrés-Poveda, Elena; Zurita-Sorrosa, Gabriela; Samaniego-Maigua, Iván; Angós Iturgaiz, Ignacio; Agronomía, Biotecnología y Alimentación; Agronomia, Bioteknologia eta ElikaduraLa fritura es un método de cocción con mayor aceptación a nivel mundial, confiere a los alimentos y específicamente a la papa ciertas características únicas de aroma, sabor y textura, destruye los microorganismos e inactiva las enzimas. Sin embargo, este proceso a nivel doméstico y agroindustrial se realiza a temperaturas que superan los 120 ºC, lo que puede propiciar la formación de acrilamida, a niveles que superan los límites permisibles para el consumo humano. Por lo que el objetivo de este estudio fue determinar el contenido de acrilamida en siete variedades de papa procesadas por fritura convencional y al vacío. Esta investigación se desarrolló en el Departamento de Nutrición y Calidad de la Estación Experimental Santa Catalina, INIAP. Con el plan de experiencias de Doehler, se determinó las siguientes condiciones de tiempo y temperatura para la fritura convencional: variedades Diacol Capiro, INIAP-Rubí, Superchola e INIAP-Victoria (175 °C, 2.75 min), Josefina y Natividad (162 °C y 3.13 min) e INIAP-Libertad (175 °C, 2.00 min). La fritura al vacío se realizó 125 °C, 6 min y 11,30 kPa. El contenido de acrilamida varió dependiendo de la variedad de papa y las condiciones de fritura. En INIAP-Natividad y Superchola, procesadas por fritura convencional (162-175 ºC), sobre-fritura (188 ºC) y al vacío (125 ºC), la concentración de acrilamida no superó el límite de detección. Mientras que en Diacol Capiro, INIAP-Josefina, INIAP-Rubí e INIAP-Victoria fritas a 188 ºC, los niveles de acrilamida superaron el límite de detección (316.12 µg·kg-1), con valores de 2412.60, 1107.20, 1114.89, 1684 µg·kg-1, respectivamente. Se determinó un alto grado de correlación (0.79) entre el porcentaje de azúcares y el contenido de acrilamida, no así entre este parámetro y el contenido de proteína.Publication Open Access Phenotyping xylem connections in grafted plants using X-ray micro-computed tomography(Wiley, 2024) Camboué, Marilou; Janoueix, Anne; Tandonnet, Jean‐Pascal; Spilmont, Anne‐Sophie; Moisy, Cédric; Mathieu, Guillaume; Cordelières, Fabrice; Teillon, Jérémie; Santesteban García, Gonzaga; Ollat, Nathalie; Cookson, Sarah Jane; Agronomía, Biotecnología y Alimentación; Agronomia, Bioteknologia eta ElikaduraPlants are able to naturally graft or inosculate their trunks, branches and roots together, this mechanism is used by humans to graft together different genotypes for a range of purposes. Grafts are considered successful if functional vascular connections between the two genotypes occur. Various techniques can evaluate xylem connections across the graft interface. However, these methods are generally unable to assess the heterogeneity and three-dimensional (3D) structure of xylem vessel connections. Here we present the use of X-ray micro-computed tomography to characterize the 3D morphology of grafts of grapevine. We show that xylem vessels form between the two plants of natural root and human-made stem grafts. The main novelty of this methodology is that we were able to visualize the 3D network of functional xylem vessels connecting the scion and rootstock in human-made stem grafts thanks to the addition of a contrast agent to the roots and improved image analysis pipelines. In addition, we reveal the presence of extensive diagonal xylem connections between the main axial xylem vessels in 2-year old grapevine stems. In conclusion, we present a method that has the potential to provide new insights into the structure and function of xylem vessels in large tissue samples.Publication Open Access Addressing the gaseous and odour emissions gap in decentralised biowaste community composting(Elsevier, 2024) González, Daniel; Barrena, Raquel; Moral-Vico, Javier; Irigoyen Iriarte, Ignacio; Sánchez, Antoni; Agronomía, Biotecnología y Alimentación; Agronomia, Bioteknologia eta ElikaduraComposting has demonstrated to be an effective and sustainable technology to valorise organic waste in the framework of circular economy, especially for biowaste. Composting can be performed in various technological options, from full-scale plants to community or even individual composters. However, there is scarce scientific information about the potential impact of community composting referred to gaseous emissions. This work examines the emissions of methane and nitrous oxide as main GHG, ammonia, VOC and odours from different active community composting sites placed in Spain, treating kitchen, leftovers and household biowaste. Expectedly, the gaseous emissions have an evident relation with the composting progress, represented mainly by its decrease as temperature or biological activity decreases. GHG and odour emission rates ranged from 5.3 to 815.2 mg CO2eq d-1 kg-1VS and from 69.8 to 1088.5 ou d-1 kg-1VS, respectively, generally being lower than those find in open-air full-scale composting. VOC characterization from the community composting gaseous emissions showed a higher VOC families’ distribution in the emissions from initial composting phases, even though terpenes such as limonene, α-pinene and β-pinene were the most abundant VOC along the composting process occurring in the different sites studied. The results presented in this study can be the basis to evaluate systematically and scientifically the numerous current projects for a worldwide community composting implementation in decentralised biowaste management schemes.Publication Open Access Effect of a topical formulation on infective viral load in lambs naturally infected with orf virus(Taylor and Francis Group, 2021) Lacasta, Delia; Reina Arias, Ramsés; Ruiz de Arcaute, Marta; Ferrer, Luis Miguel; Benito, Alfredo Ángel; Tejedor, María Teresa; Echeverría Garín, Irache; Ruiz, Héctor; Martínez Cárdenas, Silvia; Windsor, Peter Andrew; Agronomía, Biotecnología y Alimentación; Agronomia, Bioteknologia eta ElikaduraIntroduction: Orf is a highly contagious eruptive viral disease of the skin and mucosa of sheep and goats. Although vaccination with live or attenuated orf virus is the preferred option for disease control, the vaccine is unavailable in many countries. Treatment of orf lesions involves standard hygiene and in numerous cases, management of presumptive secondary infections with antibiotics, increasing risks of antimicrobial resistance (AMR). The wound dressing formulation Tri-Solfen® containing two local anaesthetics (lignocaine and bupivacaine), adrenaline and an antiseptic (cetrimide) in a gel formulation was developed for pain relief in sheep undergoing surgical husbandry procedures in Australia. Recently, TS therapy was found to reduce suffering and enhance recovery in cattle and buffalo with oral and skin lesions due to foot-and-mouth disease (FMD) virus infection. It was noted that TS has a low pH and is potentially viricidal, potentially aiding disease control. Methods: One-month-old lambs (n=14), naturally infected with orf, were recruited from a farm during a natural outbreak of the disease. The animals were selected at the early stages of the infection and randomly divided into two cohorts: Group A (n=11) treated with the topical wound gel formulation (TS); and Group B (n=3) an untreated control group. Swabs were obtained before treatment (T0) and on days one (T1), 3 (T2) and 5 (T3) post-treatment, then submitted to direct DNA extraction with real-time PCR quantification, plus incubation with primary tissue cultures from ovine skin fibroblasts (OSF) and T-immortalized goat embryonic fibroblasts (TIGEF). Results: Although no significant differences were found in the clinical progression of the lesions and PCR quantification (p=0.722) between these small cohorts, there was a significant difference (p<0.05) in reduction in infective viral load between the groups when assessed in OSF cell cultures between T0 and T3. Conclusion: These preliminary findings suggest that treatment of early stage lesions with this TS may reduce the infective viral load present in orf lesions.Publication Open Access Prevalence, identification and antimicrobial resistance of Listeria monocytogenes and Listeria spp. isolated from poultry and pork meat(Wiley, 2024) Martínez-Laorden, Alba; Arraiz-Fernández, Celia; Cantalejo Díez, María Jesús; González-Fandos, Elena; Agronomía, Biotecnología y Alimentación; Agronomia, Bioteknologia eta Elikadura; Institute on Innovation and Sustainable Development in Food Chain - ISFOODThe aim of this work was to evaluate the prevalence of Listeria monocytogenes and other Listeria spp. in chicken, duck, quail, turkey and pork meat, including the antibiotic resistance of isolated strains. A total of 184 meat samples were collected from different retailers in La Rioja (Spain). The presence of Listeria spp. and L. monocytogenes were detected in 24.46% and 10.32% of the meat samples respectively. L. monocytogenes was the predominant Listeria spp. found in chicken, quail and pork meat, while L. innocua and L. welshimeri were the predominant species in duck and turkey meat respectively. A total of thirty-three strains (55.93%) of Listeria spp. were found to be multi-resistant (resistant to ≥3 families of antibiotics). The highest multi-resistant rates were observed in L. monocytogenes (73.68%) and L. innocua (70.59%), followed by L. ivanovii (50%). Resistance to ampicillin and trimethoprim-sulfamethoxazole were found in L. monocytogenes strains isolated from chicken, being of special concern, since these antibiotics are used in the treatment of listeriosis. Special measures should be taken to reduce meat contamination such as adequate handling, correct preparation (cooking) and cleaning and disinfection in order to avoid cross-contamination.Publication Open Access Nuevos avances para el desarrollo de vacunas frente a lentivirus(Interempresasmedia, 2020) Reina Arias, Ramsés; Nistal Villán, Estanislao; Pablo Maiso, Lorena de; Echeverría Garín, Irache; Glaría Ezquer, Idoia; Andrés Cara, Damián de; Agronomía, Biotecnología y Alimentación; Agronomia, Bioteknologia eta ElikaduraLa infección de células ovinas por un virus murino no patogénico es capaz de interferir en la replicación de virus patogénicos como el Maedi Visna. El éxito en la defensa está condicionado por la capacidad inicial de respuesta con la que cuentan casi todas las células de los organismos vivos, participando en la inmunidad innata frente a cualquier infección.Publication Open Access The water footprint of Spanish Ternera de Navarra PGI beef: conventional versus novel feeding based on vegetable by-products from the local food industry(Elsevier, 2024) González-Martínez, Pablo; Goenaga Uceda, Irantzu; León Ecay, Sara; Heras Rojo, Joana de las; Aldai Elkoro-Iribe, Noelia; Insausti Barrenetxea, Kizkitza; Martínez Aldaya, Maite; Agronomía, Biotecnología y Alimentación; Agronomia, Bioteknologia eta Elikadura; Institute on Innovation and Sustainable Development in Food Chain - ISFOOD; Ciencias; Zientziak; Universidad Pública de Navarra / Nafarroako Unibertsitate PublikoaCONTEXT: In recent years, livestock farming has been in the spotlight. Meat production is blamed for the pollution of aquifers and rivers, as well as for the large amount of water required to feed livestock. This has highlighted the need to find alternative feeding systems for cattle breeding able to reduce food/feed competition. OBJECTIVE: In this context, the present study compares the water footprint (WF) of conventionally fed beef versus beef fed with vegetable by-products from the local agri-food industry. METHODS: Twenty-four entire male young bulls were reared under the Ternera de Navarra Protected Geographic Identification (PGI) in the town of Azoz, in Navarra, Spain. Twelve calves were fattened on a diet based on vegetable by-products and fodder and grain to complement the ration (VBP diet) and the remaining animals were fattened with a traditional diet based on concentrate and straw (conventional or control diet). RESULTS AND CONCLUSIONS: Once the fattening was finished and animals were slaughtered, the results showed a larger green, blue and grey WF in terms of m3 per beef cattle for conventionally fed animals compared to those fed with VBP. However, when looking at the efficiency, the results were mixed. Conventionally fed cattle exhibited lower green and grey WFs but a higher blue WF compared to VBP-fed cattle, with values of 9955 l/kg, 1577 l/kg and 1731 l/kg versus 10,147 l/kg, 1457 l/kg and 1831 l/kg of carcass beef, respectively. SIGNIFICANCE: This means that a by-product-based calf diet can reduce blue water use. However, further research is needed on the indirect water pollution associated with animal-fed crop production.Publication Open Access Structural and spatial shifts in the viticulture potential of main european wine regions as an effect of climate change(MDPI, 2024) Irimia, Liviu Mihai; Patriche, Cristian Valeriu; Petitjean, Théo; Tissot, Cyril; Santesteban García, Gonzaga; Neethling, Etienne; Foss, Chris; Le Roux, Renan; Quénol, Hervé; Agronomía, Biotecnología y Alimentación; Agronomia, Bioteknologia eta ElikaduraClimate change modifies the base climate of the wine regions and, with it, the structure of their traditional types of wine production, imposing measures to adapt, mitigate, or capitalize on the newly emerging conditions. In order to assess the impact of climate change and establish the appropriate adaptation measures for each wine region, regional and local studies are needed, which allow knowledge of their current climate profile. The aim of this research was to identify the changes that appeared as an effect of climate change in the initial climate profile and the initial structure of the traditional types of wine production of Bordeaux (France), Loire Valley (France), Rhine-Main-Nahe (Germany), La Rioja (Spain) and Cotnari (Romania) wine regions, and also in climate suitability for wine production of the Sussex area from the UK. The study uses multi-year averages for the 1951¿1990 and 1991¿2010 time periods of reference bioclimatic indices for viticulture, namely the Average Temperature of the Growing Season (AvGST), the Huglin Index (HI), and the Oenoclimatic Aptitude Index (IAOe). The results of this research reveal significant changes in climate suitability for wine production of the studied wine regions: in the Bordeaux wine region, climate change led to the appearance of conditions for the cultivation of the Mediterranean climate varieties Grenache, Syrah, and Carignan; in the cool climate wine regions Rhine-Main-Nahe and Cotnari, traditional producers of white wines, the climate has also become suitable for the cultivation of Pinot noir and Cabernet franc varieties, and implicitly for the production of red wines; in all studied wine regions, the classes of climate suitability for viticulture shifted higher in altitude, as is the case of the La Rioja region, where, in the recent period, the grapevine can be grown up to 922.9 m asl, higher by 206.2 m compared to the 1951¿1990 time period; in the low area of each wine region, one or even two new climate suitability classes for wine grape growing appeared. The shifts revealed by this research generate solid conclusions regarding the effect of climatic change on the viticultural potential of geographical areas, namely: in the context of climate change, the altitude of the wine region has a major influence on the evolution of the local viticulture potential; a higher topography allows a better adaptation of the wine region to climate change; low-elevation wine regions are more vulnerable to climate changes, especially the further south they are located; as an effect of climate change, conditions appear in the wine regions for the cultivation of new grapevine varieties and the production of new types of wine.Publication Open Access Sendai virus, a strong inducer of anti-lentiviral state in ovine cells(MDPI, 2020) Pablo Maiso, Lorena de; Echeverría Garín, Irache; Rius-Rocabert, Sergio; Luján, Lluís; Garcin, Dominique; Andrés Cara, Damián de; Nistal Villán, Estanislao; Reina Arias, Ramsés; Agronomía, Biotecnología y Alimentación; Agronomia, Bioteknologia eta ElikaduraSmall ruminant lentiviruses (SRLVs) are widely spread in the ovine and caprine populations, causing an incurable disease aecting animal health and production. Vaccine development is hindered owing to the high genetic heterogeneity of lentiviruses and the selection of T-cell and antibody escape mutants, requiring antigen delivery optimization. Sendai virus (SeV) is a respiratory paramyxovirus in mice that has been recognized as a potent inducer of innate immune responses in several species, including mouse and human. The aim of this study was to stimulate an innate antiviral response in ovine cells and evaluate the potential inhibitory eect upon small ruminant lentivirus (SRLV) infections. Ovine alveolar macrophages (AMs), blood-derived macrophages (BDMs), and skin fibroblasts (OSFs) were stimulated through infection with SeV encoding green fluorescent protein (GFP). SeV eciently infected ovine cells, inducing an antiviral state in AM from SRLV naturally-infected animals, as well as in in vitro SRLV-infected BDM and OSF from non-infected animals. Supernatants from SeV-infected AM induced an antiviral state when transferred to fresh cells challenged with SRLV. Similar to SRLV, infectivity of an HIV-1-GFP lentiviral vector was also restricted in ovine cells infected with SeV. In myeloid cells, an M1-like proinflammatory polarization was observed together with an APOBEC3Z1 induction, among other lentiviral restriction factors. Our observations may boost new approximations in ameliorating the SRLV burden by stimulation of the innate immune response using SeV-based vaccine vectors.Publication Open Access Multi-platform detection of small ruminant lentivirus antibodies and provirus as biomarkers of production losses(Frontiers Media, 2020) Echeverría Garín, Irache; Miguel, Ricardo de; Pablo Maiso, Lorena de; Glaría Ezquer, Idoia; Benito, Alfredo A.; Blas, Ignacio de; Andrés Cara, Damián de; Luján, Lluís; Reina Arias, Ramsés; Agronomía, Biotecnología y Alimentación; Agronomia, Bioteknologia eta ElikaduraSmall ruminant lentiviruses (SRLVs) are endemic in most areas of Europe, causing a chronic infection and a multisystemic disease affecting the udder, carpal joints, lungs, and central nervous system. Due to the lack of treatments and protective vaccination strategies, infection control is focused on the identification of infected animals through serological or molecular techniques. However, antigenic and genetic heterogeneity of SRLVs represent a clear drawback for diagnosis. Infected animals may present lower animal production parameters such as birth weight or milk production and quality, depending on productive systems considered and, likely, to the diagnostic method applied. In this study, four sheep flocks dedicated to dairy or meat production were evaluated using three different ELISA and two PCR strategies to classify animal population according to SRLV infection status. Productive parameters were recorded along one whole lactation or reproductive period and compared between positive and negative animals. SRLV was present in 19% of the total population, being unequally distributed in the different flocks. Less than half of the infected animals were detected by a single diagnostic method, highlighting the importance of combining different diagnostic techniques. Statistical analysis employing animal classification using all the diagnostic methods associated lambing size, lamb weight at birth, and daily weight gain with SRLV infection status in meat flocks. Milk production, somatic cell count, fat, and protein content in the milk were associated with SRLV infection in dairy flocks, to a greater extent in the flock showing higher seroprevalence. A multi-platform SRLV diagnostic strategy was useful for ensuring correct animal classification, thus validating downstream studies investigating production traits.Publication Open Access A novel postbiotic product based on Weissella cibaria for enhancing disease resistance in rainbow trout: aquaculture application(MDPI, 2024) Quintanilla Pineda, Mario Alejandro; Ibáñez Moya, Francisco C.; Garrote Achou, Chajira Camila; Marzo Pérez, Florencio; Agronomía, Biotecnología y Alimentación; Agronomia, Bioteknologia eta Elikadura; Ciencias; ZientziakPostbiotics are innovative tools in animal husbandry, providing eco-friendly solutions for disease management within the industry. In this study, a new postbiotic product was evaluated for its impact on the health of rainbow trout (Oncorhynchus mykiss). In vivo studies were conducted to assess the safety of the Weissella cibaria strains used in postbiotic production. Additionally, this study evaluated the impact of diet supplementation with 0.50% postbiotics on growth performance during a 30-day feeding trial; the gut microbial communities, immunomodulation, and protection against Yersinia ruckeri infection were evaluated. The strains did not harm the animals during the 20-day observation period. Furthermore, the effect of postbiotics on growth performance was not significant (p < 0.05). The treated group showed a significant increase in acid-lactic bacteria on the 30th day of the feeding trial, with counts of 3.42 ± 0.21 log CFU/mL. Additionally, there was an up-regulation of the pro-inflammatory cytokine IL-1β in head kidney samples after 48 h of feed supplementation, whereas cytokines IL-10, IL-8, INF-γ, and TNF-α were down-regulated. The findings indicate that rainbow trout fed with postbiotics saw an improvement in their survival rate against Y. ruckeri, with a 20.66% survival improvement in the treated group. This study proves that incorporating postbiotics from two strains of W. cibaria previously isolated from rainbow trout into the diet of fish has immunomodulatory effects, enhances intestinal microbial composition, and improves fish resistance against Y. ruckeri.Publication Open Access Nature-based strategies to regenerate the functioning and biodiversity of vineyards(Wiley, 2024) Ochoa‐Hueso, Raúl; Cantos‐Villar, Emma; Puertas, Belén; Aguiar del Río, Juan F.; Belda, Ignacio; Delgado-Baquerizo, Manuel; Fernández, Victoria; Gallardo, Antonio; García-Morales, José L.; Garde-Cerdán, Teresa; Santesteban García, Gonzaga; Lazcano, Cristina; Liberal, Isabel M.; Serrano-Grijalva, Lilia; Tortosa, Germán; Casimiro‐Soriguer, Ramón; Agronomía, Biotecnología y Alimentación; Agronomia, Bioteknologia eta Elikadura; Institute for Multidisciplinary Research in Applied Biology - IMABGrapevine is one of the most important perennial fruit crops worldwide. Historically, vineyards were compatible with soil conservation practices and multitrophic biodiversity, but vineyards are now generally eroded and biologically impoverished, making them more susceptible to pests and diseases. However, the idiosyncrasy of the wine sector places wine growers in a unique position to lead the adoption of a range of sustainable management strategies and, thus, to pioneer a wider transformation of the agricultural sector. In this article, we provide an overview of nature-based management strategies that may be used for the regeneration of the functioning and biodiversity of vineyards and that may also lead to improved plant nutrition, grape berry quality and the suppression of pathogens and pests. These strategies include the use of microbial and nonmicrobial biostimulants, fertilization with organic amendments as well as foliar fertilization with nature-based products, the use of cover crops and the reintegration of livestock in vineyards, especially sheep. We will also pay special attention to the implementation of circular economy in the vineyard in relation to the previously mentioned management strategies and will also discuss the importance of considering all these aspects from a holistic and integrative perspective, rather than taking them into account as single factors. Assuming the integral role of soils in the functioning of agroecosystems, soils will be considered transversally across all sections. Finally, we will argue that the time is now ripe for innovation from the public and private sectors to contribute to the sustainable management of vineyards while maintaining, or even improving, the profit margin for farmers and winemakers.Publication Open Access The transcriptional landscape of plant infection by the rice blast fungus Magnaporthe oryzae reveals distinct families of temporally co-regulated and structurally conserved effectors(Oxford University Press, 2023) Yan, Xia; Tang, Bozeng; Ryder, Lauren S.; MacLean, Dan; Were, Vincent M.; Eseola, Alice Bisola; Cruz-Mireles, Neftaly; Ma, Weibin; Foster, Andrew J.; Osés Ruiz, Miriam; Talbot, Nicholas J.; Agronomía, Biotecnología y Alimentación; Agronomia, Bioteknologia eta ElikaduraThe rice blast fungus Magnaporthe oryzae causes a devastating disease that threatens global rice (Oryza sativa) production. Despite intense study, the biology of plant tissue invasion during blast disease remains poorly understood. Here we report a high-resolution transcriptional profiling study of the entire plant-associated development of the blast fungus. Our analysis revealed major temporal changes in fungal gene expression during plant infection. Pathogen gene expression could be classified into 10 modules of temporally co-expressed genes, providing evidence for the induction of pronounced shifts in primary and secondary metabolism, cell signaling, and transcriptional regulation. A set of 863 genes encoding secreted proteins are differentially expressed at specific stages of infection, and 546 genes named MEP (Magnaporthe effector protein) genes were predicted to encode effectors. Computational prediction of structurally related MEPs, including the MAX effector family, revealed their temporal co-regulation in the same co-expression modules. We characterized 32 MEP genes and demonstrate that Mep effectors are predominantly targeted to the cytoplasm of rice cells via the biotrophic interfacial complex and use a common unconventional secretory pathway. Taken together, our study reveals major changes in gene expression associated with blast disease and identifies a diverse repertoire of effectors critical for successful infection.Publication Open Access Effects of spices mixture and cooking on phytochemical content in Ethiopian spicy hot red pepper products(Wiley, 2023) Hadero Medalcho, Tadewos; Abegaz, Kebede; Dessalegn, Engeda; Maté Caballero, Juan Ignacio; Agronomía, Biotecnología y Alimentación; Agronomia, Bioteknologia eta ElikaduraSpicy hot red pepper, the most popular spice in Ethiopia, is also locally known as berbere, which is highly valued for its pungency, flavor, and color. The spicy hot red pepper powder is used to flavor shiro and other stews, as well as different forms of condiments. The aim of this study was to measure the phytochemical content of raw spices (black cumin, garlic, ginger, and cardamom) and control hot red pepper (HRP), as well as the raw and cooked experimental and commercial spicy hot red pepper products. The samples were analyzed for phytochemical content using a spectrophotometer. Compared to raw experimental spicy hot red pepper, raw spices, and HRP, raw commercial spicy hot red pepper exhibited the highest bioactive phytochemicals. The cooked commercial spicy hot red pepper or sauté had the highest total flavonoid content (TFC) and total carotenoid content (TCC). Similarly, cooked experimental spicy hot red pepper contained the highest levels of total phenolic content (TPC) and β-carotene. With r values ranging from 0.24 to 0.65, the TPC and TFC of raw spices were correlated with antioxidant activity. There was a significant correlation between TCC and 2,2-diphenyl-1-picrylhydrazyl (DPPH) (r = .71), 2, 2′-azino-bis (3-ethylbenzothiazoline-6-sulfonic acid) (ABTS) (r = .95), and ferric ion reducing antioxidant power (FRAP) (r = .76), as well as between β-carotene and DPPH (r = .69), FRAP (r = .69), and ferrous ion chelating activity (FICA) (r = .78). This study verified that raw spices and their mix with hot red pepper are good sources of bioactive phytochemicals with radicals scavenging abilities in Ethiopian diets.Publication Open Access Source-sink manipulation does not mitigate the effects of grapevine red blotch virus (GRBV) infection on fruit sugar and flavonoid accumulation in Cabernet-Sauvignon(International Viticulture and Enlogy Society, 2023) Kurtural, Sahap Kaan; Tanner, Justin D.; Mainos, Dimitirios; Yu, Runze; Torres Molina, Nazareth; Martínez-Lüscher, Johann; Agronomía, Biotecnología y Alimentación; Agronomia, Bioteknologia eta Elikadura; Institute for Multidisciplinary Research in Applied Biology - IMABGrapevine red blotch virus (GRBV) negatively affects the composition of grapevine (Vitis vinifera L.) berries by reducing total soluble solids and anthocyanins, leading to economic losses for grape producers. Negative effects of GRBV were suspected to be due to impeded carbon translocation from leaves to fruit which limits sugar and flavonoid accumulation in berries. A two-year trial was conducted to determine whether an increase in source: sink ratio may affect sugar allocation and mitigate the effects of GRBV on Cabernet-Sauvignon plants. Experimental design was factorial (2 by 2) with healthy plants that did not have the virus (GRBV (-)) and plants having GRBV (GRBV (+)) and plants were subjected either untreated (UNT) or cluster thinned down to 10 clusters (CT). Effects of cluster thinning and virus status on leaf and shoot total soluble sugars (TSS), plant water status, leaf gas exchange, berry primary and secondary metabolites, and yield components were measured. The TSS in leaves began to accumulate around véraison. In shoot sap, GRBV(-) plants had greater concentration in TSS than GRBV(+) plants. The presence of disease improved plant water status increasing the stem water potential and increasing berry mass. However, juice total soluble solids were consistently lower in GRBV(+) plants despite increasing source: sink ratio by 3× with cluster removal. Likewise, GRBV(+) plants produced berries with lower anthocyanin content at harvest regardless of CT in both years. Our results suggest that GRBV infection severally impeded carbohydrate translocation out of the leaves, and in contrast to healthy plants reducing the number of clusters does not induce a reconcentration of sugars in the remaining clusters.Publication Open Access Timing of defoliation affects anthocyanin and sugar decoupling in Grenache variety growing in warm seasons(Elsevier, 2024) Fernández-Zurbano, Purificación; Santesteban García, Gonzaga; Villa Llop, Ana; Loidi Erviti, Maite; Peñalosa, Carlos; Músquiz, Sergio; Torres Molina, Nazareth; Agronomía, Biotecnología y Alimentación; Agronomia, Bioteknologia eta Elikadura; Institute for Multidisciplinary Research in Applied Biology - IMAB; Universidad Pública de Navarra / Nafarroako Unibertsitate PublikoaWarming trends over the winegrowing regions lead to an advance of grapevine phenology, decreased yield and increased sugar content with a lower polyphenol content. We hypothesized that different leaf removal timings may counteract these effects. A two-year experiment was conducted in La Rioja (Spain) with Vitis vinifera L. cv. Grenache trained in an open-vase system. Trial consisted in a complete block design with two leaf removal treatments differing in the moment of manipulation: i) severe leaf removal treatment conducted after fruit set (ELR); and ii) severe leaf removal at veraison (LLR) compared to an untreated control (Control). Both leaf removal treatments tended to decrease sugar content with no effect on yield, these effects being highly affected by the year. Defoliation accounted for a decreased flavanol and stilbene contents in berries at harvest. An ELR increased anthocyanin and phenolic acid contents at harvest, while warming during 2022 accounted for decreased contents of all the monitored groups of flavonols. ELR was only effective for delaying ripening by means of impairing the sugar:anthocyanin decoupling during the 2021 growing season which was related to lower % of kaempferol. Altogether, results suggested that defoliation should still be applied under currently warming trends in some viticulture regions.Publication Open Access Conventional and newly bred rootstock effects on the ecophysiological response of Vitis vinifera L. cv. Tempranillo(Elsevier, 2023) Buesa, Ignacio; Torres Molina, Nazareth; Tortosa, Ignacio; Marín Ederra, Diana; Villa Llop, Ana; Douthe, Cyril; Santesteban García, Gonzaga; Medrano, H.; Escalona, José M.; Agronomía, Biotecnología y Alimentación; Agronomia, Bioteknologia eta Elikadura; Institute for Multidisciplinary Research in Applied Biology - IMABAchieving more environmentally sustainable vineyards, particularly regarding efficient water use, is paramount in semi-arid grape-growing regions. Rootstocks may be a possible strategy to address these challenges, but require a comprehensive evaluation of their effect on the scion, including ecophysiological traits. The objectives of this study were 1) to characterize the physiological response of Tempranillo cultivar grafted onto five commercial (1103 P, 110 R, 140Ru, 420 A, and SO4), and seven recently bred (RG2, RG3, RG4, RG6, RG7, RG8 and RG9) rootstocks and 2) to elucidate the relationships between agronomic and physiological traits conferred by grapevine rootstocks. This was carried out over three seasons (2018–2020) in a typical Mediterranean vineyard by determining water relations, leaf gas exchange, carbon isotope ratios and vegetative development and yield components. The results highlighted the different behaviour of ‘Tempranillo’ vines due to the rootstock effects on vine water status, photosynthetic performance, hydraulic conductance, vegetative growth and yield parameters. Overall, rootstocks inducing vigour and yield in the scion, such as 140Ru and RG8, showed higher leaf gas exchange rates and hydraulic conductance at the whole-plant level due to less negative water potentials, suggesting a higher water uptake and transport capacity than RG2, RG7 and RG9. The RG rootstocks showed a very wide range of ecophysiological responses, but only RG8 outperformed compared to the most widely used commercial rootstocks. Moreover, this response was modulated by the season and the block soil type, suggesting the importance of rootstock selection according to the edaphoclimatic conditions. Therefore, this study highlights the high potential of rootstocks to adapt to water scarcity by improving crop water productivity in vineyards and provides physiological insights for future studies and breeding programmes.