Listar Artículos de revista - Aldizkari artikuluak por autor UPNA "Ramírez Nasto, Lucía"
Mostrando ítems 1-20 de 26
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101 Dothideomycetes genomes: a test case for predicting lifestyles and emergence of pathogens
Haridas, Sajeet; Castanera Andrés, Raúl
; Culley, D. E.; Daum, C.; Ramírez Nasto, Lucía ; Alfaro Sánchez, Manuel (Westerdijk Fungal Biodiversity Institute, 2020)
Artículo / Artikulua 
Dothideomycetes is the largest class of kingdom Fungi and comprises an incredible diversity of lifestyles, many of which have evolved multiple times. Plant pathogens represent a major ecological niche of the class ... -
Comparative and transcriptional analysis of the predicted secretome in the lignocellulose-degrading basidiomycete fungus Pleurotus ostreatus
Alfaro Sánchez, Manuel ; Castanera Andrés, Raúl ; Lavín Trueba, José Luis ; Oguiza Tomé, José Antonio ; Ramírez Nasto, Lucía ; Pisabarro de Lucas, Gerardo (WileySociety for Applied Microbiology, 2016)
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Fungi interact with their environment by secreting proteins to obtain nutrients, elicit responses and modify their surroundings. Because the set of proteins secreted by a fungus is related to its lifestyle, it should be ... -
Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis
Fernández Fueyo, Elena; Ruiz Dueñas, Francisco J.; Ferreira, Patricia; Floudas, Dimitrios; Lavín Trueba, José Luis; Oguiza Tomé, José Antonio ; Pérez Garrido, María Gumersinda ; Pisabarro de Lucas, Gerardo ; Ramírez Nasto, Lucía ; Santoyo Santos, Francisco (National Academy of Sciences, 2012)
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Efficient lignin depolymerization is unique to the wood decay basidiomycetes, collectively referred to as white rot fungi. Phanerochaete chrysosporium simultaneously degrades lignin and cellulose, whereas the closely related ... -
Comparative genomics of Coniophora olivacea reveals different patterns of genome expansion in Boletales
Castanera Andrés, Raúl ; Pérez Garrido, María Gumersinda ; López Varas, Leticia ; Amselem, Joëlle; LaButti, Kurt; Singan, Vasanth; Lipzen, Anna; Haridas, Sajeet; Barry, Kerrie; Grigoriev, Igor V.; Pisabarro de Lucas, Gerardo ; Ramírez Nasto, Lucía (BioMed Central, 2017)
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Background: Coniophora olivacea is a basidiomycete fungus belonging to the order Boletales that produces brown-rot decay on dead wood of conifers. The Boletales order comprises a diverse group of species including saprotrophs ... -
Effect of nutritional factors and copper on the regulation of laccase enzyme production in Pleurotus ostreatus
Durán Sequeda, Dinary Eloísa; Suspes, Daniela; Maestre, Estibenson; Alfaro Sánchez, Manuel ; Pérez Garrido, María Gumersinda ; Ramírez Nasto, Lucía ; Pisabarro de Lucas, Gerardo ; Sierra Ramírez, Rocío (MDPI, 2022)
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This research aimed to establish the relationship between carbon–nitrogen nutritional factors and copper sulfate on laccase activity (LA) by Pleurotus ostreatus. Culture media composition was tested to choose the nitrogen ... -
Expansion of the global RNA virome reveals diverse clades of bacteriophages
Neri, Uri; Wolf, Yuri I.; Roux, Simon; Camargo, Antonio Pedro; Lee, Benjamin; Kazlauskas, Darius; Chen, I. Min; Ivanova, Natalia; Zeigler Allen, Lisa; Paez-Espino, David; Bryant, Donald A.; Bhaya, Devaki; Krupovic, Mart; Dolja, Valerian V.; Kyrpides, Nikos C.; Koonin, Eugene V.; Gophna, Uri; RNA Virus Discovery Consortium; Narrowe, Adrienne B.; Ramírez Nasto, Lucía ; Wang, Zhong; Nusslein, Klaus; Meredith, Laura K.; Buée, Marc; Huntemann, Marcel; Kalyuzhnaya, Marina G.; Waldrop, Mark P.; Sullivan, Matthew B.; Schrenk, Matthew O.; Hess, Matthias; Vega, Michael A.; O’Malley, Michelle A.; Medina, Mónica; Gilbert, Naomi E.; Delherbe, Nathalie; Mason, Olivia U.; Probst, Alexander J.; Sczyrba, Alexander; Kohler, Annegret; Séguin, Armand; Shade, Ashley; Campbell, Barbara J.; Lindahl, Björn D.; Reese, Brandi Kiel; Roque, Breanna M.; DeRito, Christopher; Averill, Colin; Cullen, Daniel; Beck, David A.C.; Walsh, David A.; Ward, David M.; Wu, Dongying; Eloe-Fadrosh, Emiley; Brodie, Eoin L.; Dijkstra, Paul; Chuckran, Peter F.; Baldrian, Petr; Constant, Philippe; Stepanauskas, Ramunas; Daly, Rebecca A.; Lamendella, Regina; Gruninger, Robert J.; McKay, Robert M.; Hylander, Samuel; Lebeis, Sarah L.; Esser, Sarah P.; Acinas, Silvia G.; Young, Erica B.; Lilleskov, Erik A.; Castillo, Federico J.; Martin, Francis; LeCleir, Gary R.; Attwood, Graeme T.; Cadillo-Quiroz, Hinsby; Simon, Holly M.; Hewson, Ian; Grigoriev, Igor V.; Tiedje, James M.; Jansson, Janet K.; Lee, Janey; VanderGheynst, Jean S.; Dangl, Jeff; Bowman, Jeff S.; Blanchard, Jeffrey L.; Bowen, Jennifer L.; Xu, Jiangbing; Banfield, Jillian F.; Deming, Jody W.; Kostka, Joel E.; Gladden, John M.; Rapp, Josephine Z.; Sharpe, Joshua; McMahon, Katherine D.; Treseder, Kathleen K.; Bidle, Kay D.; Wrighton, Kelly C.; Thamatrakoln, Kimberlee; Wilhelm, Steven S.; Singer, Steven W.; Tringe, Susannah S.; Woyke, Tanja; Reddy, T.B.K.; Bell, Terrence H.; Mock, Thomas; McAllister, Tim; Thiel, Vera; Denef, Vincent J.; Liu, Wen-Tso; Martens-Habbena, Willm; Liu, Xiao-Jun Allen; Cooper, Zachary S. (Elsevier, 2022)
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High-throughput RNA sequencing offers broad opportunities to explore the Earth RNA virome. Mining 5,150 diverse metatranscriptomes uncovered >2.5 million RNA virus contigs. Analysis of >330,000 RNA-dependent RNA polymerases ... -
Genetic linkage map of the edible basidiomycete Pleurotus ostreatus
Larraya Reta, Luis María ; Pérez Garrido, María Gumersinda ; Ritter, Enrique; Pisabarro de Lucas, Gerardo ; Ramírez Nasto, Lucía (American Society for Microbiology, 2000)
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We have constructed a genetic linkage map of the edible basidiomycete Pleurotus ostreatus (var. Florida). The map is based on the segregation of 178 random amplified polymorphic DNA and 23 restriction fragment length polymorphism ... -
Genomic analysis enlightens agaricales lifestyle evolution and increasing peroxidase diversity
Ruiz Dueñas, Francisco J.; Barrasa, José M.; Sánchez-García, Marisol; Camarero, Susana; Miyauchi, Shingo; Linde, Dolores; Babiker, Rashid; Drula, Elodie; Ayuso-Fernández, Iván; Pacheco, Remedios; Padilla, Guillermo; Ferreira, Patricia; Barriuso, Jorge; Kellner, Harald; Castanera Andrés, Raúl ; Alfaro Sánchez, Manuel ; Ramírez Nasto, Lucía ; Pisabarro de Lucas, Gerardo ; Riley, Robert; Kuo, Alan; Andreopoulos, William; LaButti, Kurt; Pangilinan, Jasmyn; Tritt, Andrew; Lipzen, Anna; He, Guifen; Yan, Mi; Vivian, Ng; Grigoriev, Igor V.; Cullen, Daniel; Martin, Francis; Rosso, Marie-Noëlle; Henrissat, Bernard; Hibbett, David; Martínez, Ángel T.; Serrano, Ana (Oxford University Press, 2021)
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As actors of global carbon cycle, Agaricomycetes (Basidiomycota) have developed complex enzymatic machineries that allow them to decompose all plant polymers, including lignin. Among them, saprotrophic Agaricales are ... -
Genomics and transcriptomics characterization of genes expressed during postharvest at 4 degrees C by the edible basidiomycete Pleurotus ostreatus
Ramírez Nasto, Lucía ; Oguiza Tomé, José Antonio ; Pérez Garrido, María Gumersinda ; Lavín Trueba, José Luis ; Omarini, Alejandra; Santoyo Santos, Francisco ; Alfaro Sánchez, Manuel ; Castanera Andrés, Raúl ; Parenti, Alejandra ; Muguerza Domínguez, Elaia ; Pisabarro de Lucas, Gerardo (Viguera Editores, S. L., 2011)
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Pleurotus ostreatus is an industrially cultivated basidiomycete with nutritional and environmental applications. Its genome, which was sequenced by the joint Genome Institute, has become a model for lignin degradation ... -
Glucose counteracts wood-dependent induction of lignocellulolytic enzyme secretion in monokaryon and dikaryon submerged cultures of the white-rot basidiomycete Pleurotus ostreatus
Alfaro Sánchez, Manuel ; Majcherczyk, A.; Kües, Ursula; Ramírez Nasto, Lucía ; Pisabarro de Lucas, Gerardo (Nature Research, 2020)
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The secretome complexity and lignocellulose degrading capacity of Pleurotus ostreatus monokaryons mkPC9 and mkPC15 and mated dikaryon dkN001 were studied in submerged liquid cultures containing wood, glucose, and wood plus ... -
Highly expressed captured genes and cross-kingdom domains present in Helitrons create novel diversity in Pleurotus ostreatus and other fungi
Castanera Andrés, Raúl ; Pérez Garrido, María Gumersinda ; López Varas, Leticia ; Sancho, Rubén; Santoyo Santos, Francisco ; Alfaro Sánchez, Manuel ; Gabaldón Estevan, Juan Antonio; Pisabarro de Lucas, Gerardo ; Oguiza Tomé, José Antonio ; Ramírez Nasto, Lucía (BioMed Central, 2014)
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Background: Helitrons are class-II eukaryotic transposons that transpose via a rolling circle mechanism. Due to their ability to capture and mobilize gene fragments, they play an important role in the evolution of their ... -
Ligninolytic peroxidase gene expression by Pleurotus ostreatus: differential regulation in lignocellulose medium and effect of temperature and pH
Fernández Fueyo, Elena; Castanera Andrés, Raúl ; Ruiz Dueñas, Francisco J.; Ramírez Nasto, Lucía ; Pisabarro de Lucas, Gerardo (Elsevier, 2014)
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Pleurotus ostreatus is an important edible mushroom and a model lignin degrading organism, whose genome contains nine genes of ligninolytic peroxidases, characteristic of white-rot fungi. These genes encode six manganese ... -
Mapping of genomic regions (quantitative trait loci) controlling production and quality in industrial cultures of the edible basidiomycete Pleurotus ostreatus
Larraya Reta, Luis María ; Alfonso Esquíroz, Mikel ; Pisabarro de Lucas, Gerardo ; Ramírez Nasto, Lucía (American Society for Microbiology, 2003)
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Industrial production of the edible basidiomycete Pleurotus ostreatus (oyster mushroom) is based on a solid fermentation process in which a limited number of selected strains are used. Optimization of industrial mushroom ... -
Metatranscriptomics sheds light on the links between the functional traits of fungal guilds and ecological processes in forest soil ecosystems
Auer, Lucas; Buée, Marc; Fauchery, Laure; Lombard, Vincent; Barry, Kerry W.; Clum, Alicia; Copeland, Alex; Daum, Chris; LaButti, Kurt; Singan, Vasanth; Yoshinaga, Yuko; Martineau, Christine; Castillo Martínez, Federico ; Alfaro Sánchez, Manuel ; Castillo Martínez, Federico ; Imbert Rodríguez, Bosco ; Ramírez Nasto, Lucía ; Castanera Andrés, Raúl; Pisabarro de Lucas, Gerardo ; Finlay, Roger; Lindahl, Björn D.; Olson, Ake; Séguin, Armand; Kohler, Annegret; Henrissat, Bernard; Grigoriev, Igor V.; Martin, Francis M. (Blackwell Scientific Publications Ltd, 2023)
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Soil fungi belonging to different functional guilds, such as saprotrophs, pathogens, and mycorrhizal symbionts, play key roles in forest ecosystems. To date, no study has compared the actual gene expression of these guilds ... -
Non-additive transcriptional profiles underlie dikaryotic superiority in Pleurotus ostreatus laccase activity
Castanera Andrés, Raúl ; Omarini, Alejandra; Santoyo Santos, Francisco ; Pérez Garrido, María Gumersinda ; Pisabarro de Lucas, Gerardo ; Ramírez Nasto, Lucía (Public Library of Science, 2013)
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Background: The basidiomycete Pleurotus ostreatus is an efficient producer of laccases, a group of enzymes appreciated for their use in multiple industrial processes. The aim of this study was to reveal the molecular basis ... -
Quantitative trait loci controlling vegetative growth rate in the edible basidiomycete Pleurotus ostreatus
Larraya Reta, Luis María ; Idareta Olagüe, Eneko ; Arana, Dani; Ritter, Enrique; Pisabarro de Lucas, Gerardo ; Ramírez Nasto, Lucía (American Society for Microbiology, 2002)
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Mycelium growth rate is a quantitative characteristic that exhibits continuous variation. This trait has applied interest, as growth rate is correlated with production yield and increased advantage against competitors. In ... -
Relationship between monokaryotic growth rate and mating type in the edible basidiomycete Pleurotus ostreatus
Larraya Reta, Luis María ; Pérez Garrido, María Gumersinda ; Iribarren, Iñaki; Blanco Vaca, Juan Antonio ; Alfonso Esquíroz, Mikel ; Pisabarro de Lucas, Gerardo ; Ramírez Nasto, Lucía (American Society for Microbiology, 2001)
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The edible fungus Pleurotus ostreatus (oyster mushroom) is an industrially produced heterothallic homobasidiomycete whose mating is controlled by a bifactorial tetrapolar genetic system. Two mating loci (matA and matB) ... -
A secretomic view of woody and nonwoody lignocellulose degradation by Pleurotus ostreatus
Fernández Fueyo, Elena; Ruiz Dueñas, Francisco J.; López Lucendo, María F.; Pérez Boada, Marta; Rencoret, Jorge; Gutiérrez, Ana; Pisabarro de Lucas, Gerardo ; Ramírez Nasto, Lucía ; Martínez, Ángel T. (BioMed Central, 2016)
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Background: Pleurotus ostreatus is the second edible mushroom worldwide, and a model fungus for delignification applications, with the advantage of growing on woody and nonwoody feedstocks. Its sequenced genome is ... -
Somatic transposition and meiotically driven elimination of an active helitron family in Pleurotus ostreatus
Borgognone, Alessandra ; Castanera Andrés, Raúl ; Muguerza Domínguez, Elaia ; Pisabarro de Lucas, Gerardo ; Ramírez Nasto, Lucía (Oxford University Press, 2017)
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Helitrons constitute a superfamily of DNA transposons that were discovered in silico and are widespread in most eukaryotic genomes. They are postulated to mobilize through a “rollingcircle” mechanism, but the experimental ... -
Strain degeneration in pleurotus ostreatus: a genotype dependent oxidative stress process which triggers oxidative stress, cellular detoxifying and cell wall reshaping genes
Pérez Garrido, María Gumersinda ; Lopez-Moya, Federico; Chuina Tomazeli, Emilia; Ibáñez-Vea, María ; Garde Sagardoy, Edurne; López Llorca, Luis V.; Pisabarro de Lucas, Gerardo ; Ramírez Nasto, Lucía (MDPI, 2021)
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Strain degeneration has been defined as a decrease or loss in the yield of important commercial traits resulting from subsequent culture, which ultimately leads to Reactive Oxygen Species (ROS) production. Pleurotus ostreatus ...
