Listar Artículos de revista DPA - NES Aldizkari artikuluak por autor UPNA "Pisabarro de Lucas, Gerardo"
Mostrando ítems 1-20 de 22
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Comparative and transcriptional analysis of the predicted secretome in the lignocellulose-degrading basidiomycete fungus Pleurotus ostreatus
Alfaro Sánchez, Manuel
; Castanera Andrés, Raúl ; Lavín Trueba, José Luis ; Oguiza Tomé, José Antonio ; Ramírez Nasto, Lucía ; Pisabarro de Lucas, Gerardo (WileySociety for Applied Microbiology, 2016)
Artículo / Artikulua 
Fungi interact with their environment by secreting proteins to obtain nutrients, elicit responses and modify their surroundings. Because the set of proteins secreted by a fungus is related to its lifestyle, it should be ... -
Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis
Fernández Fueyo, Elena; Ruiz Dueñas, Francisco J.; Ferreira, Patricia; Floudas, Dimitrios; Lavín Trueba, José Luis; Oguiza Tomé, José Antonio ; Pérez Garrido, María Gumersinda ; Pisabarro de Lucas, Gerardo ; Ramírez Nasto, Lucía ; Santoyo Santos, Francisco (National Academy of Sciences, 2012)
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Efficient lignin depolymerization is unique to the wood decay basidiomycetes, collectively referred to as white rot fungi. Phanerochaete chrysosporium simultaneously degrades lignin and cellulose, whereas the closely related ... -
Comparative genomics of Coniophora olivacea reveals different patterns of genome expansion in Boletales
Castanera Andrés, Raúl ; Pérez Garrido, María Gumersinda ; López Varas, Leticia ; Amselem, Joëlle; LaButti, Kurt; Singan, Vasanth; Lipzen, Anna; Haridas, Sajeet; Barry, Kerrie; Grigoriev, Igor V.; Pisabarro de Lucas, Gerardo ; Ramírez Nasto, Lucía (BioMed Central, 2017)
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Background: Coniophora olivacea is a basidiomycete fungus belonging to the order Boletales that produces brown-rot decay on dead wood of conifers. The Boletales order comprises a diverse group of species including saprotrophs ... -
Diffusional properties of methanogenic granular sludge: 1H NMR characterization
Lens, Piet N. L.; Gastesi Barasoain, Rakel; Vergeldt, Frank; Van Aelst, Adriaan C.; Pisabarro de Lucas, Gerardo ; Van As, Henk (American Society for Microbiology, 2003)
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The diffusive properties of anaerobic methanogenic and sulfidogenic aggregates present in wastewater treatment bioreactors were studied using diffusion analysis by relaxation time-separated pulsed-field gradient nuclear ... -
Expansion of signal transduction pathways in fungi by extensive genome duplication
Corrochano, Luis M.; Kuo, Alan; Marcet Houben, Marina; Oguiza Tomé, José Antonio ; Pisabarro de Lucas, Gerardo (CellPress, 2016)
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Plants and fungi use light and other signals to regulate development, growth, and metabolism. The fruiting bodies of the fungus Phycomyces blakesleeanus are single cells that react to environmental cues, including light, ... -
Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi
Riley, Robert; Salamov, Asaf A.; Brown, Daren W.; Nagy, Laszlo G.; Floudas, Dimitrios; Held, Benjamin W.; Levasseur, Anthony; Lombard, Vincent; Morin, Emmanuelle; Pisabarro de Lucas, Gerardo (National Academy of Sciences, 2014)
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Basidiomycota (basidiomycetes) make up 32% of the described fungi and include most wood-decaying species, as well as pathogens and mutualistic symbionts. Wood-decaying basidiomycetes have typically been classified as either ... -
Genetic linkage map of the edible basidiomycete Pleurotus ostreatus
Larraya Reta, Luis María ; Pérez Garrido, María Gumersinda ; Ritter, Enrique; Pisabarro de Lucas, Gerardo ; Ramírez Nasto, Lucía (American Society for Microbiology, 2000)
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We have constructed a genetic linkage map of the edible basidiomycete Pleurotus ostreatus (var. Florida). The map is based on the segregation of 178 random amplified polymorphic DNA and 23 restriction fragment length polymorphism ... -
Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion
Martínez, Diego; Challacombe, Jean; Morgenstern, Ingo; Hibbett, David; Schmoll, Monika; Kubicek, Christian P.; Ferreira, Patricia; Pisabarro de Lucas, Gerardo ; Lavín Trueba, José Luis ; Oguiza Tomé, José Antonio (National Academy of Sciences, 2009)
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Brown-rot fungi such as Postia placenta are common inhabitants of forest ecosystems and are also largely responsible for the destructive decay of wooden structures. Rapid depolymerization of cellulose is a distinguishing ... -
Genomics and transcriptomics characterization of genes expressed during postharvest at 4 degrees C by the edible basidiomycete Pleurotus ostreatus
Ramírez Nasto, Lucía ; Oguiza Tomé, José Antonio ; Pérez Garrido, María Gumersinda ; Lavín Trueba, José Luis ; Omarini, Alejandra; Santoyo Santos, Francisco ; Alfaro Sánchez, Manuel ; Castanera Andrés, Raúl ; Parenti, Alejandra ; Muguerza Domínguez, Elaia ; Pisabarro de Lucas, Gerardo (Viguera Editores, S. L., 2011)
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Pleurotus ostreatus is an industrially cultivated basidiomycete with nutritional and environmental applications. Its genome, which was sequenced by the joint Genome Institute, has become a model for lignin degradation ... -
Highly expressed captured genes and cross-kingdom domains present in Helitrons create novel diversity in Pleurotus ostreatus and other fungi
Castanera Andrés, Raúl ; Pérez Garrido, María Gumersinda ; López Varas, Leticia ; Sancho, Rubén; Santoyo Santos, Francisco ; Alfaro Sánchez, Manuel ; Gabaldón Estevan, Juan Antonio; Pisabarro de Lucas, Gerardo ; Oguiza Tomé, José Antonio ; Ramírez Nasto, Lucía (BioMed Central, 2014)
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Background: Helitrons are class-II eukaryotic transposons that transpose via a rolling circle mechanism. Due to their ability to capture and mobilize gene fragments, they play an important role in the evolution of their ... -
Ligninolytic peroxidase gene expression by Pleurotus ostreatus: differential regulation in lignocellulose medium and effect of temperature and pH
Fernández Fueyo, Elena; Castanera Andrés, Raúl ; Ruiz Dueñas, Francisco J.; Ramírez Nasto, Lucía ; Pisabarro de Lucas, Gerardo (Elsevier, 2014)
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Pleurotus ostreatus is an important edible mushroom and a model lignin degrading organism, whose genome contains nine genes of ligninolytic peroxidases, characteristic of white-rot fungi. These genes encode six manganese ... -
Mapping of genomic regions (quantitative trait loci) controlling production and quality in industrial cultures of the edible basidiomycete Pleurotus ostreatus
Larraya Reta, Luis María ; Alfonso Esquíroz, Mikel ; Pisabarro de Lucas, Gerardo ; Ramírez Nasto, Lucía (American Society for Microbiology, 2003)
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Industrial production of the edible basidiomycete Pleurotus ostreatus (oyster mushroom) is based on a solid fermentation process in which a limited number of selected strains are used. Optimization of industrial mushroom ... -
Non-additive transcriptional profiles underlie dikaryotic superiority in Pleurotus ostreatus laccase activity
Castanera Andrés, Raúl ; Omarini, Alejandra; Santoyo Santos, Francisco ; Pérez Garrido, María Gumersinda ; Pisabarro de Lucas, Gerardo ; Ramírez Nasto, Lucía (Public Library of Science, 2013)
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Background: The basidiomycete Pleurotus ostreatus is an efficient producer of laccases, a group of enzymes appreciated for their use in multiple industrial processes. The aim of this study was to reveal the molecular basis ... -
Quantitative trait loci controlling vegetative growth rate in the edible basidiomycete Pleurotus ostreatus
Larraya Reta, Luis María ; Idareta Olagüe, Eneko ; Arana, Dani; Ritter, Enrique; Pisabarro de Lucas, Gerardo ; Ramírez Nasto, Lucía (American Society for Microbiology, 2002)
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Mycelium growth rate is a quantitative characteristic that exhibits continuous variation. This trait has applied interest, as growth rate is correlated with production yield and increased advantage against competitors. In ... -
Relationship between monokaryotic growth rate and mating type in the edible basidiomycete Pleurotus ostreatus
Larraya Reta, Luis María ; Pérez Garrido, María Gumersinda ; Iribarren, Iñaki; Blanco Vaca, Juan Antonio ; Alfonso Esquíroz, Mikel ; Pisabarro de Lucas, Gerardo ; Ramírez Nasto, Lucía (American Society for Microbiology, 2001)
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The edible fungus Pleurotus ostreatus (oyster mushroom) is an industrially produced heterothallic homobasidiomycete whose mating is controlled by a bifactorial tetrapolar genetic system. Two mating loci (matA and matB) ... -
A secretomic view of woody and nonwoody lignocellulose degradation by Pleurotus ostreatus
Fernández Fueyo, Elena; Ruiz Dueñas, Francisco J.; López Lucendo, María F.; Pérez Boada, Marta; Rencoret, Jorge; Gutiérrez, Ana; Pisabarro de Lucas, Gerardo ; Ramírez Nasto, Lucía ; Martínez, Ángel T. (BioMed Central, 2016)
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Background: Pleurotus ostreatus is the second edible mushroom worldwide, and a model fungus for delignification applications, with the advantage of growing on woody and nonwoody feedstocks. Its sequenced genome is ... -
Somatic transposition and meiotically driven elimination of an active helitron family in Pleurotus ostreatus
Borgognone, Alessandra ; Castanera Andrés, Raúl ; Muguerza Domínguez, Elaia ; Pisabarro de Lucas, Gerardo ; Ramírez Nasto, Lucía (Oxford University Press, 2017)
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Helitrons constitute a superfamily of DNA transposons that were discovered in silico and are widespread in most eukaryotic genomes. They are postulated to mobilize through a “rollingcircle” mechanism, but the experimental ... -
Telomere organization in the ligninolytic basidiomycete Pleurotus ostreatus
Pérez Garrido, María Gumersinda ; Pangilinan, Jasmyn; Pisabarro de Lucas, Gerardo ; Ramírez Nasto, Lucía (American Society for Microbiology, 2008)
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Telomeres are structural and functional chromosome regions that are essential for the cell cycle to proceed normally. They are, however, difficult to map genetically and to identify in genome-wide sequence programs because ... -
Transcriptional and enzymatic profiling of Pleurotus ostreatus laccase genes in submerged and solid-state fermentation cultures
Castanera Andrés, Raúl ; Pérez Garrido, María Gumersinda ; Omarini, Alejandra; Alfaro Sánchez, Manuel ; Pisabarro de Lucas, Gerardo ; Faraco, Vicenza; Amore, Antonella; Ramírez Nasto, Lucía (American Society for Microbiology, 2012)
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The genome of the white rot basidiomycete Pleurotus ostreatus includes 12 phenol oxidase (laccase) genes. In this study, we examined their expression profiles in different fungal strains under different culture conditions ... -
Transposable elements versus the fungal genome: impact on whole-genome architecture and transcriptional profiles
Castanera Andrés, Raúl ; López Varas, Leticia ; Borgognone, Alessandra ; LaButti, Kurt; Lapidus, Alla; Schmutz, Jeremy; Grimwood, Jane; Pérez Garrido, María Gumersinda ; Pisabarro de Lucas, Gerardo ; Grigoriev, Igor V.; Stajich, Jason E.; Ramírez Nasto, Lucía (Public Library of Science, 2016)
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Transposable elements (TEs) are exceptional contributors to eukaryotic genome diversity. Their ubiquitous presence impacts the genomes of nearly all species and mediates genome evolution by causing mutations and chromosomal ...
