• Plasmid replicons from Pseudomonas are natural chimeras of functional, exchangeable modules 

      Bardají Goikoetxea, Leire Upna; Añorga García, Maite Upna; Ruiz Masó, José A.; Solar, Gloria del; Murillo Martínez, Jesús Upna (Frontiers Media, 2017)   Artículo / Artikulua  OpenAccess
      Plasmids are a main factor for the evolution of bacteria through horizontal gene exchange, including the dissemination of pathogenicity genes, resistance to antibiotics and degradation of pollutants. Their capacity to ...
    • Four genes essential for recombination define GInts, a new type of mobile genomic island widespread in bacteria 

      Bardají Goikoetxea, Leire Upna; Echeverría Ancín, Myriam Upna; Rodríguez Palenzuela, Pablo; Martínez García, Pedro M.; Murillo Martínez, Jesús Upna (Nature Publishing Group, 2017)   Artículo / Artikulua  OpenAccess
      Integrases are a family of tyrosine recombinases that are highly abundant in bacterial genomes, actively disseminating adaptive characters such as pathogenicity determinants and antibiotics resistance. Using comparative ...
    • Knots untie: molecular determinants involved in knot formation Induced by Pseudomonas savastanoi in woody hosts 

      Caballo Ponce, Eloy; Murillo Martínez, Jesús Upna; Martínez Gil, Marta; Moreno Pérez, Alba; Pintado, Adrián; Ramos, Cayo (Frontiers Media, 2017)   Artículo / Artikulua  OpenAccess
      The study of the molecular basis of tree diseases is lately receiving a renewed attention, especially with the emerging perception that pathogens require specific pathogenicity and virulence factors to successfully colonize ...
    • Molecular characterization of Tunisian strains of Erwinia amylovora 

      Dardouri, Sana; Chehimi, Sonia; Murillo Martínez, Jesús Upna; Hajlaoui, Mohamed Rabeh (Italian Phytopathological Society, 2017)   Artículo / Artikulua  OpenAccess
      The present study focused on the molecular characterization of a collection of Erwinia amylovora isolates recovered from different outbreaks in Tunisia between 2012 and 2014. Analysis of 54 isolates, including the reference ...
    • Effect of feeding regime on composting in bins 

      Storino, Francesco Upna; Menéndez Villanueva, Sergio Upna; Muro Erreguerena, Julio Upna; Aparicio Tejo, Pedro María Upna; Irigoyen Iriarte, Ignacio Upna (Taylor & Francis, 2017)   Artículo / Artikulua  OpenAccess
      Composting in bins is one of the most practical home composting methods. There is currently a need for greater information to improve the management of the composting process and to create home composting programs, which ...
    • Genome-wide association mapping of flowering and ripening periods in apple 

      Urrestarazu Vidart, Jorge; Muranty, Hélène; Denancé, Caroline; Leforestier, Diane; Ravon, Elisa; Guyader, Arnaud; Guisnel, Rémi; Feugey, Laurence; Aubourg, Sébastien; Celton, Jean Marc; Daccord, Nicolas; Dondini, Luca; Gregori, Roberto; Lateur, Marc; Houben, Patrick; Ordidge, Matthew; Paprstein, Frantisek; Sedlak, Jiri; Nybom, Hilde; Garkava Gustavsson, Larisa; Troggio, Michela; Bianco, Luca; Velasco, Riccardo; Poncet, Charles; Théron, Anthony; Moriya, Shigeki; Bink, Marco C. A. M.; Laurens, François; Tartarini, Stefano; Durel, Charles Eric (Frontiers Media, 2017)   Artículo / Artikulua  OpenAccess
      Deciphering the genetic control of flowering and ripening periods in apple is essential for breeding cultivars adapted to their growing environments. We implemented a large Genome-Wide Association Study (GWAS) at the ...
    • Somatic transposition and meiotically driven elimination of an active helitron family in Pleurotus ostreatus 

      Borgognone, Alessandra Upna; Castanera Andrés, Raúl; Muguerza Domínguez, Elaia Upna; Pisabarro de Lucas, Gerardo Upna; Ramírez Nasto, Lucía Upna (Oxford University Press, 2017)   Artículo / Artikulua  OpenAccess
      Helitrons constitute a superfamily of DNA transposons that were discovered in silico and are widespread in most eukaryotic genomes. They are postulated to mobilize through a “rollingcircle” mechanism, but the experimental ...
    • VerSeDa: vertebrate secretome database 

      Cortázar, Ana R.; Oguiza Tomé, José Antonio Upna; Aransay, Ana M.; Lavín Trueba, José Luis Upna (Oxford University Press, 2017)   Artículo / Artikulua  OpenAccess
      Based on the current tools, de novo secretome (full set of proteins secreted by an organism) prediction is a time consuming bioinformatic task that requires a multifactorial analysis in order to obtain reliable in silico ...
    • Comparative genomics of Coniophora olivacea reveals different patterns of genome expansion in Boletales 

      Castanera Andrés, Raúl Upna; Pérez Garrido, Gumersinda Upna; López Varas, Leticia; Amselem, Joëlle; LaButti, Kurt; Singan, Vasanth; Lipzen, Anna; Haridas, Sajeet; Barry, Kerrie; Grigoriev, Igor V.; Pisabarro de Lucas, Gerardo Upna; Ramírez Nasto, Lucía Upna (BioMed Central, 2017)   Artículo / Artikulua  OpenAccess
      Background: Coniophora olivacea is a basidiomycete fungus belonging to the order Boletales that produces brown-rot decay on dead wood of conifers. The Boletales order comprises a diverse group of species including saprotrophs ...
    • Severe trimming and enhanced competition of laterals as a tool to delay ripening in Tempranillo vineyards under semiarid conditions 

      Santesteban García, Gonzaga Upna; Miranda Jiménez, Carlos Upna; Urrestarazu Vidart, Jorge; Loidi Erviti, Maite; Royo Díaz, José Bernardo Upna (Université de Bordeaux, 2017)   Artículo / Artikulua  OpenAccess
      Aim: An advance in grapevine phenological stages (including ripening) is occurring worldwide due to global warming and, in the hottest seasons, already results in a lack of synchrony between sugar and phenolic ripeness, ...
    • Chrysodeixis chalcites nucleopolyhedrovirus (ChchNPV): natural occurrence and efficacy as a biological insecticide on young banana plants in greenhouse and open-field conditions on the Canary Islands 

      Fuentes Barrera, Ernesto Gabriel; Hernández Suárez, Estrella; Simón de Goñi, Oihane; Williams, Trevor Upna; Caballero Murillo, Primitivo Upna (Public Library of Science, 2017)   Artículo / Artikulua  OpenAccess
      Chrysodeixis chalcites, an important pest of banana crops on the Canary Islands, is usually controlled by chemical insecticides. The present study aimed to evaluate the efficacy of the most prevalent isolate of the ...
    • Co-infection with iflaviruses influences the insecticidal properties of Spodoptera exigua multiple nucleopolyhedrovirus occlusion bodies: implications for the production and biosecurity of baculovirus insecticides 

      Carballo Palos, Arkaitz; Murillo Pérez, Rosa Upna; Jakubowska, Agata; Herrero, Salvador; Williams, Trevor Upna; Caballero Murillo, Primitivo Upna (Public Library of Science, 2017)   Artículo / Artikulua  OpenAccess
      Biological insecticides based on Spodoptera exigua multiple nucleopolyhedrovirus (SeMNPV) can efficiently control S. exigua larvae on field and greenhouse crops in many parts of the world. Spanish wild populations and ...
    • Temperature-mediated biosynthesis of the phytotoxin phaseolotoxin by Pseudomonas syringae pv. phaseolicola depends on the autoregulated expression of the phtABC genes 

      Aguilera, Selene; Álvarez Morales, Ariel; Murillo Martínez, Jesús Upna; Hernández Flores, José Luis; Bravo, Jaime; Torre Zavala, Susana de la (Public Library of Science, 2017)   Artículo / Artikulua  OpenAccess
      Pseudomonas syringae pv. phaseolicola produces phaseolotoxin in a temperature dependent manner, being optimally synthesized between 18ºC and 20ºC, while no detectable amounts are present above 28ºC. The Pht cluster, ...
    • Adiposity and adipogenic gene expression in four different muscles in beef cattle 

      Martínez del Pino, Lara; Arana Navarro, Ana Upna; Alfonso Ruiz, Leopoldo Upna; Mendizábal Aizpuru, José Antonio Upna; Soret Lafraya, Beatriz Upna (Public Library of Science, 2017)   Artículo / Artikulua  OpenAccess
      Anatomical site and divergent functionalities of muscles can be related to differences in IMF content, metabolism and adipogenic gene expression. Then, potential differences in different muscles in beef cattle were ...
    • Lacanobia oleracea nucleopolyhedrovirus (LaolNPV): a new European species of alphabaculovirus with a narrow host range 

      Simón de Goñi, Oihane; Erlandson, Martin A.; Frayssinet, Marie; Williams, Trevor Upna; Theilmann, David A.; Volkoff, Anne Nathalie; Caballero Murillo, Primitivo Upna (Public Library of Science, 2017)   Artículo / Artikulua  OpenAccess
      During an insect sampling program in alfalfa crops near Montpellier, France in 2011, Lacanobia oleracea larvae were collected that died due to nucleopolyhedrovirus infection (LaolNPV). This virus was subjected to molecular ...
    • Meat waste as feedstock for home composting: effects on the process and quality of compost 

      Storino, Francesco Upna; Sánchez Arizmendiarrieta, Joseba; Irigoyen Iriarte, Ignacio Upna; Muro Erreguerena, Julio Upna; Aparicio Tejo, Pedro María Upna (Elsevier, 2016)   Artículo / Artikulua  OpenAccess
      Home composting is a powerful tool, which is spreading in different parts of the world, to reduce the generation of municipal waste. However, there is debate concerning the appropriateness, in terms of domestic hygiene and ...
    • Effects of addition of linseed and marine algae to the diet on adipose tissue development, fatty acid profile, lipogenic gene expression, and meat quality in lambs 

      Urrutia Vera, Olaia Upna; Mendizábal Aizpuru, José Antonio Upna; Insausti Barrenetxea, Kizkitza Upna; Soret Lafraya, Beatriz Upna; Purroy Unanua, Antonio Upna; Arana Navarro, Ana Upna (Public Library of Science, 2016)   Artículo / Artikulua  OpenAccess
      This study examined the effect of linseed and algae on growth and carcass parameters, adipocyte cellularity, fatty acid profile and meat quality and gene expression in subcutaneous and intramuscular adipose tissues (AT) ...
    • Transposable elements versus the fungal genome: impact on whole-genome architecture and transcriptional profiles 

      Castanera Andrés, Raúl Upna; López Varas, Leticia Upna; Borgognone, Alessandra Upna; LaButti, Kurt; Lapidus, Alla; Schmutz, Jeremy; Grimwood, Jane; Pérez Garrido, Gumersinda Upna; Pisabarro de Lucas, Gerardo Upna; Grigoriev, Igor V.; Stajich, Jason E.; Ramírez Nasto, Lucía Upna (Public Library of Science, 2016)   Artículo / Artikulua  OpenAccess
      Transposable elements (TEs) are exceptional contributors to eukaryotic genome diversity. Their ubiquitous presence impacts the genomes of nearly all species and mediates genome evolution by causing mutations and chromosomal ...
    • Shelf life of ground beef enriched with omega-3 and/or conjugated linoleic acid and use of grape seed extract to inhibit lipid oxidation 

      Gómez Bastida, Inmaculada Upna; Beriain Apesteguía, María José Upna; Mendizábal Aizpuru, José Antonio Upna; Realini, Carolina; Purroy Unanua, Antonio Upna (Wiley, 2016)   Artículo / Artikulua  OpenAccess
      The shelf life and oxidative stability of refrigerated raw ground beef enriched with omega-3 and/or conjugated linoleic acid (CLA) were studied. Grape seed extract (GSE) was used to inhibit lipid oxidation in the ground ...
    • A secretomic view of woody and nonwoody lignocellulose degradation by Pleurotus ostreatus 

      Fernández Fueyo, Elena; Ruiz Dueñas, Francisco J.; López Lucendo, María F.; Pérez Boada, Marta; Rencoret, Jorge; Gutiérrez, Ana; Pisabarro de Lucas, Gerardo Upna; Ramírez Nasto, Lucía Upna; Martínez, Ángel T. (BioMed Central, 2016)   Artículo / Artikulua  OpenAccess
      Background: Pleurotus ostreatus is the second edible mushroom worldwide, and a model fungus for delignification applications, with the advantage of growing on woody and nonwoody feedstocks. Its sequenced genome is ...